PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR08G15240.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family HD-ZIP
Protein Properties Length: 266aa    MW: 29158 Da    PI: 4.3332
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR08G15240.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox603.9e-194497356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                     k+++++ eq+++Le+ Fe ++++  e++++LA+ lgL+ rqV vWFqNrRa++k
  LPERR08G15240.1 44 KKRRLSVEQVRALERSFETENKLEPERKARLARDLGLQPRQVAVWFQNRRARWK 97
                     456899***********************************************9 PP
2HD-ZIP_I/II134.92.7e-4343135193
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                      ekkrrls eqv++LE+sFe+e+kLeperK++lar+LglqprqvavWFqnrRAR+ktkqlE+dy+aL+++yd+l+++ ++L++++++L +e+ke
  LPERR08G15240.1  43 EKKRRLSVEQVRALERSFETENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLERDYAALRSSYDSLRSDYDALRRDKDALLAEIKE 135
                      69**************************************************************************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.67E-1933101IPR009057Homeodomain-like
PROSITE profilePS5007117.3943999IPR001356Homeobox domain
SMARTSM003891.6E-1842103IPR001356Homeobox domain
PfamPF000462.2E-164497IPR001356Homeobox domain
CDDcd000865.39E-1844100No hitNo description
Gene3DG3DSA:1.10.10.606.6E-2046106IPR009057Homeodomain-like
PRINTSPR000318.9E-67079IPR000047Helix-turn-helix motif
PROSITE patternPS0002707497IPR017970Homeobox, conserved site
PRINTSPR000318.9E-67995IPR000047Helix-turn-helix motif
PfamPF021831.5E-1899140IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MRRPSDGGGD LVVSDGDGFG GVGMEEEMDV DDDMVMRGGG GGEKKRRLSV EQVRALERSF  60
ETENKLEPER KARLARDLGL QPRQVAVWFQ NRRARWKTKQ LERDYAALRS SYDSLRSDYD  120
ALRRDKDALL AEIKELKGKL GDEDAAASFS SAVKEERPAD RPPAAAPQGS SESDSSAVVS  180
DAEAEILTEN KTATAAAVVA EEEVVTGGAL LHHDHAEVFF HGQMLKVDDD EAAFLGDDDA  240
ACGGFFSDEQ LPSLPWWAEP AEQWTN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16874ERKARLA
29199RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR08G15240.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0682441e-154AK068244.1 Oryza sativa Japonica Group cDNA clone:J013140I04, full insert sequence.
GenBankAK1068181e-154AK106818.1 Oryza sativa Japonica Group cDNA clone:002-116-D05, full insert sequence.
GenBankCT8294461e-154CT829446.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA031N19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650851.11e-122homeobox-leucine zipper protein HOX20
SwissprotA2YWC01e-123HOX20_ORYSI; Homeobox-leucine zipper protein HOX20
SwissprotQ6Z2481e-123HOX20_ORYSJ; Homeobox-leucine zipper protein HOX20
TrEMBLA0A0D9X9030.0A0A0D9X903_9ORYZ; Uncharacterized protein
STRINGLPERR08G15240.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30093482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65310.21e-36homeobox protein 5
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]