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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR08G15140.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | ZF-HD | ||||||||
Protein Properties | Length: 294aa MW: 30732.2 Da PI: 7.1185 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 102.7 | 2.4e-32 | 60 | 113 | 4 | 58 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 +rY+eClkNhA+ +GghavDGCgEfm++ geeg+++al+CaACgCHRnFHR+e++ LPERR08G15140.1 60 TRYRECLKNHAVGIGGHAVDGCGEFMAA-GEEGSIDALRCAACGCHRNFHRKESD 113 79*************************9.999********************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 3.2E-29 | 60 | 112 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 7.0E-25 | 61 | 114 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 8.3E-30 | 61 | 111 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.963 | 62 | 111 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.29E-20 | 217 | 292 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.4E-33 | 219 | 293 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 7.1E-26 | 231 | 287 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MDFDEHDDGD GDEEMPPMPL SSGYDAPMQP GIGAAGGLPK PGDSGGRFGT PGGGGGGGAT 60 RYRECLKNHA VGIGGHAVDG CGEFMAAGEE GSIDALRCAA CGCHRNFHRK ESDSPTGAGP 120 TDQPSAVSPA AISAYGASPH HQFSPYYRTP AGYLHHQQQH HQIAAAAAAA AVAAGYPPHQ 180 RPLALPSTSH SGRDEGDDMS GLVGPMMIGP MVGNMSLGSG GGPSGSGGSG KKRFRTKFTQ 240 EQKDKMLAFA ERLGWRIQKH DEAAVQQFCE EVCVKRHVLK VWMHNNKHTL GKKP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 1e-28 | 232 | 289 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR08G15140.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015695882.1 | 1e-161 | PREDICTED: zinc-finger homeodomain protein 2 | ||||
Swissprot | A2YWA6 | 1e-141 | ZHD2_ORYSI; Zinc-finger homeodomain protein 2 | ||||
Swissprot | Q6ZB90 | 1e-141 | ZHD2_ORYSJ; Zinc-finger homeodomain protein 2 | ||||
TrEMBL | A0A0D9X8Z0 | 0.0 | A0A0D9X8Z0_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR08G15140.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3950 | 32 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 2e-60 | homeobox protein 22 |
Publications ? help Back to Top | |||
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