PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR08G15030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | bHLH | ||||||||
Protein Properties | Length: 208aa MW: 22685.8 Da PI: 10.0418 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.3 | 1.3e-13 | 18 | 64 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h+e+Er+RR+riN +++Lr+l+P+a +++Ka+ L ++v+++++L LPERR08G15030.1 18 RSHSEAERKRRQRINAHLATLRTLVPSA-----SRMDKAALLGEVVRHVREL 64 58*************************9.....7***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.758 | 15 | 64 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.76E-11 | 18 | 65 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.8E-14 | 18 | 65 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.7E-11 | 18 | 64 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.3E-13 | 19 | 73 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.1E-11 | 21 | 70 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:3.30.70.260 | 2.1E-4 | 110 | 178 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MVMTDGECSA RKAVAPVRSH SEAERKRRQR INAHLATLRT LVPSASRMDK AALLGEVVRH 60 VRELRCRADD ATEGVGVVVP GEGDEVGVEE DDVAVSVGER RWRRRVRAWV CCADRPGLMS 120 DLGRAVRSVS ARPVRAEVAT VGGRTRSVLE LDVAVRDGAT DDNNHDRAVA LSALRAALRT 180 VLLNRDDLLA AADGYKRPRF SPRCSSLS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 23 | 28 | ERKRRQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR08G15030.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015649548.1 | 7e-88 | transcription factor AIG1 | ||||
TrEMBL | A0A0D9X8X6 | 1e-141 | A0A0D9X8X6_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR08G15030.1 | 1e-142 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4114 | 35 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56770.1 | 6e-14 | bHLH family protein |