PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR08G14670.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family HSF
Protein Properties Length: 393aa    MW: 43338 Da    PI: 9.7093
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR08G14670.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind94.11.6e-29211452103
                      HHHHHHHHHCTGGGTTTSEES..SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT................... CS
     HSF_DNA-bind   2 Flkklyeiledeelkelisws..engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks................... 74 
                      Fl+k+y++++d+++++++sw   + g sfvv+ + efa+++Lp+yFkhsnf+SFvRQLn+Y  + +++     ++                   
  LPERR08G14670.1  21 FLTKTYQLVNDPATDHVVSWGddAGGGSFVVWRPPEFARDILPNYFKHSNFSSFVRQLNTYV-RIITNMYVLLRDyvhaingaspdalrrmqgf 113
                      9*******************9533469**********************************6.4444444333335778888999988887776 PP

                      .X..TTSEEEEESXXXXXXXXXXXXXXXXXXX CS
     HSF_DNA-bind  75 .k..ekiweFkhksFkkgkkellekikrkkse 103
                       k  ++ weF+++ F+kg+k+ll++i+r+ks+
  LPERR08G14670.1 114 rKivPERWEFANEFFRKGEKQLLCEIHRRKSS 145
                      61669************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.7E-3211137IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.1E-4217142IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.98E-2718142IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000567.1E-132144IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004479.1E-2721142IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.1E-136173IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.1E-137486IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MEWEESDAAR QKAAAAVPAP FLTKTYQLVN DPATDHVVSW GDDAGGGSFV VWRPPEFARD  60
ILPNYFKHSN FSSFVRQLNT YVRIITNMYV LLRDYVHAIN GASPDALRRM QGFRKIVPER  120
WEFANEFFRK GEKQLLCEIH RRKSSPATWP PFPPPFFAAS RHHFAGVGAA ALFRHVGDAT  180
LHGLMTTTDQ VRRRHWFERA VAAAPPSRLL ELAAPAPGSA VEEALVEENE RLRRGNAALA  240
QEVAHMRRLY SDIIYFVQNR VRHVEPSPAA AVLHGILRPA STSGKVYCDG ASGGRSATSS  300
SSLTVAADQD QPLLALRLPR TTEEINGDVV AVAGGGSGST KLFGVQLSTD DQTSSGVSRK  360
RSLQEQHPTT SPARKRMMAV EHDELRLSVV SPP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A8e-171714517123Heat shock factor protein 1
5hdg_A8e-17171427110Heat shock factor protein 1
5hdn_A8e-17171427110Heat shock factor protein 1
5hdn_B8e-17171427110Heat shock factor protein 1
5hdn_C8e-17171427110Heat shock factor protein 1
5hdn_D8e-17171427110Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR08G14670.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126161e-61CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649314.11e-129putative heat stress transcription factor B-4a
SwissprotQ6Z9R81e-130HFB4A_ORYSJ; Putative heat stress transcription factor B-4a
TrEMBLA0A0D9X8S60.0A0A0D9X8S6_9ORYZ; Uncharacterized protein
STRINGLPERR08G14670.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.16e-69heat shock transcription factor B4