PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

LPERR08G14560.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

GeBP

Protein Properties

Length: 472aa MW: 50922.1 Da PI: 9.9816

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR08G14560.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	94.9	8.5e-30	206	303	3	97
DUF573 3 fqrlwseeDeivlLqGlidfkaktgk..spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifelsk 93 r+w+ eDe+++L++li+++ak+g+ +s+++ ++++++++++ +k+s++ql++KirrLK+Kf+ ++ +ksg+ep+f + hd+++++lsk LPERR08G14560.1 206 QPRVWNPEDEVTILRALITYRAKNGVlpGSSQETAKLHNMIRGQLTVKASTTQLSDKIRRLKHKFNLILARvTKSGREPNFPTVHDREVYDLSK 299 579*********************888899********************************999899**************** PP DUF573 94 kiWg 97 k+W+ LPERR08G14560.1 300 KVWN 303 *8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	1.0E-26	207	303	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 472 aa Download sequence Send to blast
MAPKRPDAAS GSASEASDGE APRRRSRSRS RSPSRSVSLS PSRSRSKTPP SNLHPNPAAL 60 STPASAAVDF AAVSDSDADA AAADADADAD ARLASPRRSR ERSPRLHSDS DNSAAAEVEE 120 ADAEAVAVAA ASDDGDDEGN ATPPPRSRRS SRVEPSSIKP ISSRPMDASR RPATPAAAGG 180 SSQSQRRSKR PRASPAQHSP EYQKRQPRVW NPEDEVTILR ALITYRAKNG VLPGSSQETA 240 KLHNMIRGQL TVKASTTQLS DKIRRLKHKF NLILARVTKS GREPNFPTVH DREVYDLSKK 300 VWNSKTGGVI SAGAGSAGGG GGGRVYENVE EVAESDEEQG SAESDDDMES GWDDRDHRNK 360 RLKAIVANGN GNAIVTGGRS VHGNGSWKGD AAEKGKDMYP YLWEAVEELS KEHPSGTTFR 420 KAFGMLDGSR ARAMEEKLNR FRLSEIRQQV RRMDLMKETI KMVLDALEGT IE

Sequence ? help Back to Top

Protein Sequence Length: 472 aa Download sequence Send to blast

MAPKRPDAAS GSASEASDGE APRRRSRSRS RSPSRSVSLS PSRSRSKTPP SNLHPNPAAL  60
STPASAAVDF AAVSDSDADA AAADADADAD ARLASPRRSR ERSPRLHSDS DNSAAAEVEE  120
ADAEAVAVAA ASDDGDDEGN ATPPPRSRRS SRVEPSSIKP ISSRPMDASR RPATPAAAGG  180
SSQSQRRSKR PRASPAQHSP EYQKRQPRVW NPEDEVTILR ALITYRAKNG VLPGSSQETA  240
KLHNMIRGQL TVKASTTQLS DKIRRLKHKF NLILARVTKS GREPNFPTVH DREVYDLSKK  300
VWNSKTGGVI SAGAGSAGGG GGGRVYENVE EVAESDEEQG SAESDDDMES GWDDRDHRNK  360
RLKAIVANGN GNAIVTGGRS VHGNGSWKGD AAEKGKDMYP YLWEAVEELS KEHPSGTTFR  420
KAFGMLDGSR ARAMEEKLNR FRLSEIRQQV RRMDLMKETI KMVLDALEGT IE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	22	30	RRRSRSRSR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR08G14560.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015695633.1	0.0	PREDICTED: mediator-associated protein 1-like, partial
TrEMBL	A0A0D9X8R3	0.0	A0A0D9X8R3_9ORYZ; Uncharacterized protein
STRING	LPERR08G14560.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2671	35	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28040.1	2e-13	DNA-binding storekeeper protein-related transcriptional regulator