PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR08G14000.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 236aa    MW: 25430.2 Da    PI: 4.2227
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR08G14000.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.13.9e-172069255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     +ykGVr +k +grWv+eIr p++   r r++lg++ +ae+Aa+a +aa+ +l+g
  LPERR08G14000.1 20 RYKGVRLRK-WGRWVSEIRMPNS---RERIWLGSYESAEKAARAFDAAAVCLRG 69
                     7******99.**********933...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.9E-102069IPR001471AP2/ERF domain
SMARTSM003801.2E-282085IPR001471AP2/ERF domain
CDDcd000186.63E-172081No hitNo description
Gene3DG3DSA:3.30.730.109.7E-272081IPR001471AP2/ERF domain
PROSITE profilePS5103221.7862079IPR001471AP2/ERF domain
SuperFamilySSF541713.73E-182080IPR016177DNA-binding domain
PRINTSPR003671.6E-82132IPR001471AP2/ERF domain
PRINTSPR003671.6E-84359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MDQDGISGGA APPQSSPERR YKGVRLRKWG RWVSEIRMPN SRERIWLGSY ESAEKAARAF  60
DAAAVCLRGS GGAVSLNFPD SPPDIRCCFP GALLTIEQIQ AEAARHANRL YTPAAASTTN  120
TAAVAVSPSY SSQQELAFPA RSTSDDTAVS LPFTDGGVAD YGGGDDDVID WSFMDALPAM  180
SAPSLPAGNI NAEIVPAIDD FMYGFLHPMR QNEDDVEDVI DGNGDQAFFS VDLWRF
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR08G14000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0046621e-91AP004662.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0048G02.
GenBankAP0149641e-91AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649307.14e-89ethylene-responsive transcription factor ERF017
TrEMBLA0A0D9X8J81e-171A0A0D9X8J8_9ORYZ; Uncharacterized protein
STRINGLPERR08G14000.11e-172(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86132144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.15e-24ERF family protein