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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR08G14000.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | ERF | ||||||||
Protein Properties | Length: 236aa MW: 25430.2 Da PI: 4.2227 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.1 | 3.9e-17 | 20 | 69 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +ykGVr +k +grWv+eIr p++ r r++lg++ +ae+Aa+a +aa+ +l+g LPERR08G14000.1 20 RYKGVRLRK-WGRWVSEIRMPNS---RERIWLGSYESAEKAARAFDAAAVCLRG 69 7******99.**********933...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.9E-10 | 20 | 69 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-28 | 20 | 85 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.63E-17 | 20 | 81 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 9.7E-27 | 20 | 81 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.786 | 20 | 79 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.73E-18 | 20 | 80 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.6E-8 | 21 | 32 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-8 | 43 | 59 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MDQDGISGGA APPQSSPERR YKGVRLRKWG RWVSEIRMPN SRERIWLGSY ESAEKAARAF 60 DAAAVCLRGS GGAVSLNFPD SPPDIRCCFP GALLTIEQIQ AEAARHANRL YTPAAASTTN 120 TAAVAVSPSY SSQQELAFPA RSTSDDTAVS LPFTDGGVAD YGGGDDDVID WSFMDALPAM 180 SAPSLPAGNI NAEIVPAIDD FMYGFLHPMR QNEDDVEDVI DGNGDQAFFS VDLWRF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR08G14000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004662 | 1e-91 | AP004662.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0048G02. | |||
GenBank | AP014964 | 1e-91 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015649307.1 | 4e-89 | ethylene-responsive transcription factor ERF017 | ||||
TrEMBL | A0A0D9X8J8 | 1e-171 | A0A0D9X8J8_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR08G14000.1 | 1e-172 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP861 | 32 | 144 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19210.1 | 5e-24 | ERF family protein |