 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
LPERR08G13830.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
| Family |
MYB |
| Protein Properties |
Length: 204aa MW: 22244 Da PI: 5.7611 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| LPERR08G13830.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 35.6 | 2.2e-11 | 18 | 59 | 6 | 48 |
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
teEde l ++v+++ +W+ Ia+ ++ +R +k+c++ w ++l
LPERR08G13830.1 18 TEEDEALRRGVREHRRQNWAEIAAALP-RRGPKSCRLQWCQHL 59
589************************.***********9986 PP
|
| 2 | Myb_DNA-binding | 49.1 | 1.3e-15 | 67 | 110 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
++T+ Ed l+v +++G++ W+tIar+++ gR+++ +k+rw++
LPERR08G13830.1 67 APFTPVEDALIVAQQRLHGNK-WATIARCLP-GRSDNAVKNRWNST 110
68*******************.*********.***********986 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 204 aa
Download sequence Send
to blast |
MAADGDSGGG GGKKTPWTEE DEALRRGVRE HRRQNWAEIA AALPRRGPKS CRLQWCQHLS 60
PELDTRAPFT PVEDALIVAQ QRLHGNKWAT IARCLPGRSD NAVKNRWNST LRKLRRHGAV 120
RATEEDAAAA AAAQEDDTVM VCRELFPVRA GGVKEAAAAV ARLLAGEKED EEEDVEATGL 180
TLGLPVLSEA ELELRLGLAW PENA
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor involved in auxin response. Functions in auxin signal transduction and modulates lateral root growth. Interacts with ARF response factors to promote auxin-responsive gene expression (PubMed:17675404). In response to auxin, binds sequence-specific motifs in the promoter of the auxin-responsive gene IAA19, and activates IAA19 transcription. The IAA19 transcription activation by MYB77 is enhanced by direct interaction between MYB77 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:17675404, ECO:0000269|PubMed:24894996}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by auxin (PubMed:17675404). Down-regulated by potassium deprivation (PubMed:15173595). {ECO:0000269|PubMed:15173595, ECO:0000269|PubMed:17675404}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | CP012616 | 9e-95 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
