PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR08G13500.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | AP2 | ||||||||
Protein Properties | Length: 409aa MW: 44967.1 Da PI: 4.9241 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 36.1 | 1.7e-11 | 51 | 107 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkklege 56 ++GV++++++gr++A+++d ++n ++k+ + g ++ +e Aa+a++ a++k++g+ LPERR08G13500.1 51 AFRGVTRHRWTGRFEAHLWDkNTWNEsQSKKGRQGAYDGEEAAARAYDLAALKYWGH 107 58******************77779888877777999999**************997 PP | |||||||
2 | AP2 | 48.1 | 2.8e-15 | 149 | 200 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +g+W+A+I + g +k+ +lg++ t eeAa a++ a+ + +g LPERR08G13500.1 149 SKYRGVARHHHNGKWEARIGRvF---G-NKYLYLGTYATQEEAAVAYDIAAIEHRG 200 89****99**********99966...3.6**********************99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.48E-14 | 50 | 116 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 18.268 | 51 | 114 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.7E-12 | 51 | 115 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.2E-20 | 51 | 120 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.7E-5 | 52 | 63 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.9E-9 | 52 | 107 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.7E-5 | 96 | 116 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.55E-17 | 149 | 210 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.92E-23 | 149 | 210 | No hit | No description |
Pfam | PF00847 | 6.6E-10 | 149 | 199 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.0E-17 | 150 | 208 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.728 | 150 | 208 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.4E-26 | 150 | 214 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 409 aa Download sequence Send to blast |
MAKRRTNESA AASSDDSSSG GGGSGVDQMT RRQKRPRKSS PRDCPSQRSS AFRGVTRHRW 60 TGRFEAHLWD KNTWNESQSK KGRQGAYDGE EAAARAYDLA ALKYWGHETV LNFPLSTYDE 120 ELKEMEGQSR EEYIGSLRRK SSGFSRGVSK YRGVARHHHN GKWEARIGRV FGNKYLYLGT 180 YATQEEAAVA YDIAAIEHRG LNAVTNFDIN LYIKWHHTCR LSTTADANDS AVLDAADIED 240 LDQAIAAALN EVDDQPSTPT THQQTADEDD EFLAQLPPQL RPLMAHAASS SSTSSAIGLL 300 LQSPKFKEII EQAAASSGIS ISSSSSSSTD SPSQSPSPPL QQPTALKDDE QYNVDSSLSL 360 PARCSFPDDV QTYFGLDDDC GFGYPEVDTF LFGDLGEYAA PMFQFELDG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR08G13500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK106769 | 0.0 | AK106769.1 Oryza sativa Japonica Group cDNA clone:002-115-F07, full insert sequence. | |||
GenBank | HQ858820 | 0.0 | HQ858820.1 Oryza sativa Japonica Group isolate UT1237 AP2-EREBP transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015651011.1 | 1e-178 | AP2-like ethylene-responsive transcription factor At1g79700 | ||||
Swissprot | Q94AN4 | 1e-91 | AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060 | ||||
TrEMBL | A0A0D9X8C7 | 0.0 | A0A0D9X8C7_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR08G13500.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3319 | 36 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79700.2 | 1e-89 | AP2 family protein |
Publications ? help Back to Top | |||
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