PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR08G12790.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 255aa    MW: 27780.2 Da    PI: 6.4945
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR08G12790.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.99.5e-1758108155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      + ++GVr++  +g+WvAeIr+p   + r +r +lg+f t  +Aa a++ a+++l+g
  LPERR08G12790.1  58 CFFRGVRQRT-WGKWVAEIREP---N-RgARLWLGTFNTSLDAAHAYDSAARALYG 108
                      569****999.**********8...3.35***********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.5E-3059122IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-1959117IPR016177DNA-binding domain
PROSITE profilePS5103220.17859116IPR001471AP2/ERF domain
PfamPF008473.0E-1160108IPR001471AP2/ERF domain
PRINTSPR003671.1E-86071IPR001471AP2/ERF domain
CDDcd000185.31E-2560118No hitNo description
Gene3DG3DSA:3.30.730.102.6E-2860116IPR001471AP2/ERF domain
PRINTSPR003671.1E-88298IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MEFLNVGERC CTRQRRASNG GGNNGQASTA PATRKCCPLR RSRKGCMKGK GGPENQRCFF  60
RGVRQRTWGK WVAEIREPNR GARLWLGTFN TSLDAAHAYD SAARALYGDC ARLNLDVQPH  120
HHPPPPPVTT AINCKRSWTP CSSISDGANS SDDSTTTTLA SPEQPSVMLV DNVFTPVMQP  180
PPPPPPLPPA SQQQQQDDLE DFETYVMRLP KAEDFGLEGF QEVALDVLEE ADGGGGISLW  240
DLSICPSDIM AAALK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-1460118362ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that binds to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00519DAPTransfer from AT5G18450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR08G12790.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by high-salt and drought stresses. {ECO:0000269|PubMed:20049613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1081432e-96AK108143.1 Oryza sativa Japonica Group cDNA clone:002-139-E11, full insert sequence.
GenBankAP0046232e-96AP004623.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0705A05.
GenBankAP0054112e-96AP005411.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0044E16.
GenBankAP0149642e-96AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankAY3393752e-96AY339375.1 Oryza sativa (japonica cultivar-group) Ap22 mRNA, complete cds.
GenBankCP0126162e-96CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651102.12e-83dehydration-responsive element-binding protein 2C
SwissprotQ84ZA12e-84DRE2C_ORYSJ; Dehydration-responsive element-binding protein 2C
TrEMBLA0A0D9X8380.0A0A0D9X838_9ORYZ; Uncharacterized protein
STRINGLPERR08G12790.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55103454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18450.12e-29ERF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]