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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR08G12790.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | ERF | ||||||||
Protein Properties | Length: 255aa MW: 27780.2 Da PI: 6.4945 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.9 | 9.5e-17 | 58 | 108 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 + ++GVr++ +g+WvAeIr+p + r +r +lg+f t +Aa a++ a+++l+g LPERR08G12790.1 58 CFFRGVRQRT-WGKWVAEIREP---N-RgARLWLGTFNTSLDAAHAYDSAARALYG 108 569****999.**********8...3.35***********************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 2.5E-30 | 59 | 122 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.68E-19 | 59 | 117 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 20.178 | 59 | 116 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.0E-11 | 60 | 108 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-8 | 60 | 71 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.31E-25 | 60 | 118 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.6E-28 | 60 | 116 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-8 | 82 | 98 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MEFLNVGERC CTRQRRASNG GGNNGQASTA PATRKCCPLR RSRKGCMKGK GGPENQRCFF 60 RGVRQRTWGK WVAEIREPNR GARLWLGTFN TSLDAAHAYD SAARALYGDC ARLNLDVQPH 120 HHPPPPPVTT AINCKRSWTP CSSISDGANS SDDSTTTTLA SPEQPSVMLV DNVFTPVMQP 180 PPPPPPLPPA SQQQQQDDLE DFETYVMRLP KAEDFGLEGF QEVALDVLEE ADGGGGISLW 240 DLSICPSDIM AAALK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-14 | 60 | 118 | 3 | 62 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that binds to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00519 | DAP | Transfer from AT5G18450 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR08G12790.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by high-salt and drought stresses. {ECO:0000269|PubMed:20049613}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK108143 | 2e-96 | AK108143.1 Oryza sativa Japonica Group cDNA clone:002-139-E11, full insert sequence. | |||
GenBank | AP004623 | 2e-96 | AP004623.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0705A05. | |||
GenBank | AP005411 | 2e-96 | AP005411.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0044E16. | |||
GenBank | AP014964 | 2e-96 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY339375 | 2e-96 | AY339375.1 Oryza sativa (japonica cultivar-group) Ap22 mRNA, complete cds. | |||
GenBank | CP012616 | 2e-96 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015651102.1 | 2e-83 | dehydration-responsive element-binding protein 2C | ||||
Swissprot | Q84ZA1 | 2e-84 | DRE2C_ORYSJ; Dehydration-responsive element-binding protein 2C | ||||
TrEMBL | A0A0D9X838 | 0.0 | A0A0D9X838_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR08G12790.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5510 | 34 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18450.1 | 2e-29 | ERF family protein |
Publications ? help Back to Top | |||
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