PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR08G12050.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family HD-ZIP
Protein Properties Length: 334aa    MW: 35901.2 Da    PI: 4.2642
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR08G12050.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.75.4e-2082135356
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      k++++t+eq++ Le+ Fe+++++  e+++eLA++lg+  rqV vWFqNrRa++k
  LPERR08G12050.1  82 KKRRLTAEQVQMLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWK 135
                      56789************************************************9 PP
2HD-ZIP_I/II127.75.1e-4181170190
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                      ekkrrl++eqv++LE+sFeee+kLeperK+elar+Lg+ prqvavWFqnrRAR+ktkqlE+d+++Lk+a+dal++++++L +++++Lr++
  LPERR08G12050.1  81 EKKRRLTAEQVQMLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWKTKQLETDFDRLKAAFDALAADHQALLDDNHRLRAQ 170
                      69*************************************************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007118.23677137IPR001356Homeobox domain
SMARTSM003894.6E-1980141IPR001356Homeobox domain
SuperFamilySSF466891.96E-1881144IPR009057Homeodomain-like
CDDcd000861.65E-1882138No hitNo description
PfamPF000462.4E-1782135IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.8E-2183143IPR009057Homeodomain-like
PRINTSPR000316.1E-6108117IPR000047Helix-turn-helix motif
PROSITE patternPS000270112135IPR017970Homeobox, conserved site
PRINTSPR000316.1E-6117133IPR000047Helix-turn-helix motif
PfamPF021832.6E-11137170IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001558Biological Processregulation of cell growth
GO:0009637Biological Processresponse to blue light
GO:0009651Biological Processresponse to salt stress
GO:0009965Biological Processleaf morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MDPGRVVFDS GVARRAGGAG GGGGGAQMLL FGGGGSANSG GFFRGVPTAV MGMEAGTKRP  60
FFTTHEEVIV EEEYYDEQAP EKKRRLTAEQ VQMLERSFEE ENKLEPERKT ELARRLGMAP  120
RQVAVWFQNR RARWKTKQLE TDFDRLKAAF DALAADHQAL LDDNHRLRAQ ETSRPSSAII  180
TTAAQEVDQP DEHTEAASDT GCATVDDALA PPLATARQQQ QLKDEFLSSG ATNNDDRSSG  240
GGAAVVVFDA TEGTNDVSCE SAYFAAAAEA YERDCAGQYP LSSEEEDTGA VSDEGCSFDL  300
PDDAMFGAAA GIVHHAAAGD EEAQLGSWTA WFWS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129137RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00323DAPTransfer from AT3G01470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR08G12050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1457291e-135AF145729.1 Oryza sativa homeodomain leucine zipper protein (Oshox5) mRNA, complete cds.
GenBankAK1006341e-135AK100634.1 Oryza sativa Japonica Group cDNA clone:J023110A12, full insert sequence.
GenBankAK1015691e-135AK101569.1 Oryza sativa Japonica Group cDNA clone:J033050G15, full insert sequence.
GenBankAP0046671e-135AP004667.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0433E10.
GenBankAP0149641e-135AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126161e-135CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650258.11e-147homeobox-leucine zipper protein HOX5
SwissprotQ6ZA741e-148HOX5_ORYSJ; Homeobox-leucine zipper protein HOX5
SwissprotQ9XH361e-148HOX5_ORYSI; Homeobox-leucine zipper protein HOX5
TrEMBLA0A0D9X7T80.0A0A0D9X7T8_9ORYZ; Uncharacterized protein
STRINGLPERR08G12050.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26093887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.13e-34homeobox 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]