PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR08G11750.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | ERF | ||||||||
Protein Properties | Length: 258aa MW: 28000.2 Da PI: 7.1631 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.6 | 8.4e-20 | 93 | 142 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa +++a+ +l+g LPERR08G11750.1 93 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALTYDQAAYRLRG 142 59******9.**********955...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.27E-30 | 92 | 152 | No hit | No description |
SMART | SM00380 | 5.0E-34 | 93 | 156 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.8E-32 | 93 | 152 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.024 | 93 | 150 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.53E-22 | 93 | 152 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 4.8E-14 | 94 | 142 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.8E-11 | 94 | 105 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.8E-11 | 116 | 132 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MAAAIDRSGD LMRAMGDAQF PRPAFHPALP PAPATGGHGF RYMGPAQLSP AQIQYVQAQL 60 HLQRQAHSAL GPRAQPMKPA ASSPPAAPRP QKLYRGVRQR HWGKWVAEIR LPRNRTRLWL 120 GTFDTAEEAA LTYDQAAYRL RGDAARLNFP DNAASRGPLD PAVDAKLQAI CDTIASSKNN 180 ASSSRAARAV PINAPPVSST TTHSSDDDGS ETTSSASPLA EMEQLDFSEV PWDEAEGFAL 240 TKYPSYEIDW DSLLNNNN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-19 | 92 | 150 | 4 | 63 | ATERF1 |
3gcc_A | 1e-19 | 92 | 150 | 4 | 63 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR08G11750.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK068312 | 1e-154 | AK068312.1 Oryza sativa Japonica Group cDNA clone:J013151K12, full insert sequence. | |||
GenBank | AK105725 | 1e-154 | AK105725.1 Oryza sativa Japonica Group cDNA clone:001-201-G08, full insert sequence. | |||
GenBank | AP004658 | 1e-154 | AP004658.4 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0042B03. | |||
GenBank | AP004691 | 1e-154 | AP004691.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0453D01. | |||
GenBank | AP014964 | 1e-154 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012616 | 1e-154 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. | |||
GenBank | CT831646 | 1e-154 | CT831646.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI222G01, full insert sequence. | |||
GenBank | FJ940221 | 1e-154 | FJ940221.1 Oryza sativa Japonica Group clone KCS046C03 AP domain DRE binding factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015650910.1 | 1e-122 | ethylene-responsive transcription factor RAP2-4 | ||||
Swissprot | Q8H1E4 | 7e-55 | RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4 | ||||
TrEMBL | A0A0D9X7Q7 | 0.0 | A0A0D9X7Q7_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR08G11750.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP382 | 35 | 203 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39780.1 | 9e-51 | ERF family protein |
Publications ? help Back to Top | |||
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