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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LPERR08G11070.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family |
bHLH |
Protein Properties |
Length: 564aa MW: 62562.8 Da PI: 4.7991 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LPERR08G11070.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 43 | 8e-14 | 388 | 435 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
HLH 3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
++h + ErrRR+++N+ f L++l+P+ K++Ka+iL +++ YIk+L+
LPERR08G11070.1 388 KNHVMSERRRREKLNEMFLILKSLIPSiH------KMDKASILAETITYIKELE 435
5899***********************66......****************996 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 564 aa
Download sequence Send
to blast |
MASAPPVQEE PLQPGTKPFR SQLAAAVRSI NWSYAIFWSI STSRPGVLTW KDGFYNGEVK 60 TRKLSNSAGL TADEIILQRS EQLRELYSSL LSGECDHRAR RPVAALWPED LGNTEWYYVI 120 CMTYVFWPGQ GLPGRSFASN GSVWLCNAQS ADSKTFARAL LAKTIVCVPF MSGVLELGTT 180 DLVMEEPNLV DRITASFGEP QFSACLEVPN SSPSLNETGD ADDIVLEDLI DNAIEEEQMI 240 QPGEHELSDA VVVADHQRMS NANDGLDQIT MEIDELYSLC EELDLDTTFS LEHDNSYWPM 300 NTGSFQLVRM SSPEAMAATA AEAASDFDGV VSITSCFMTW KRANLDEVTV SHTGIESQKL 360 LRKTLDGGAW RSNNGRGSVA MTQESSIKNH VMSERRRREK LNEMFLILKS LIPSIHKMDK 420 ASILAETITY IKELEKRVKE LESNSERSHQ RSTKLRGNNN INGKEIPNVG DGVGGGDASR 480 NHDWVLSEKV PSNVNVIVIH KCKWKELMIT RVFDTIKSLC LDILSVQAST PVGLFRLKIQ 540 AKFACSDEVA PERIIEALQN AIGS
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 393 | 398 | ERRRRE |
2 | 394 | 399 | RRRREK |
Functional Description ? help
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Source |
Description |
UniProt | Putative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant. |
Publications
? help Back to Top |
- Pattanaik S,Xie CH,Yuan L
The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength. Planta, 2008. 227(3): p. 707-15 [PMID:18075757] - Huang ZA, et al.
The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.). J Genet Genomics, 2012. 39(3): p. 149-56 [PMID:22464474] - Ludwig SR,Habera LF,Dellaporta SL,Wessler SR
Lc, a member of the maize R gene family responsible for tissue-specific anthocyanin production, encodes a protein similar to transcriptional activators and contains the myc-homology region. Proc. Natl. Acad. Sci. U.S.A., 1989. 86(18): p. 7092-6 [PMID:2674946] - Li P, et al.
Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize. PLoS ONE, 2018. 13(1): p. e0190670 [PMID:29304111]
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