 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
LPERR08G10910.2 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
| Family |
NF-YB |
| Protein Properties |
Length: 388aa MW: 43759.6 Da PI: 10.9164 |
| Description |
NF-YB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| LPERR08G10910.2 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NF-YB | 71.3 | 1.6e-22 | 11 | 98 | 3 | 90 |
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkky 90
++d lP + + +i+k++lP + ++++da++++ ec +efi +++se+++ c re++kti+++ +l al +lGf +y+e++++ +++
LPERR08G10910.2 11 KEDVSLPKSTMFKIIKEMLPPDVRVARDAQDLLVECCVEFINLLSSESNEVCSREDKKTIAPEHVLRALQDLGFREYIEEVQMAYEQH 98
67999***************************************************************************99866555 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 388 aa
Download sequence Send
to blast |
MDPMDIVGKS KEDVSLPKST MFKIIKEMLP PDVRVARDAQ DLLVECCVEF INLLSSESNE 60
VCSREDKKTI APEHVLRALQ DLGFREYIEE VQMAYEQHKN DTLDSPKASK FTGIEMTEEQ 120
AVAEQQRMFA EARARMNNGS QNMKRSSKHH SRHSLICTLN HSNPCSLKFS SILNHSSPHK 180
YSSTLNRSKL RSLNLSSTLN RSNHSCNRNL SSTCNPNYPR SCSRNLSSIR SHRSRHNLSS 240
ISNRSRNHSH RQSCNQWHNH KQNMAWTVAT RTLLGGREGR RPWRVARLSR MSTSPFSHLN 300
WMLSSSMISP HRRTNAAGIS APSAAVAELS SFPCIPTIVL NHIRRPRRPG KTRVSFLGPR 360
IVFTPPSGSH STSIPSALAL HTHTPSIS
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | CT841564 | 0.0 | CT841564.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C104G12, full insert sequence. |
