PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR08G08160.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family HD-ZIP
Protein Properties Length: 770aa    MW: 85713.1 Da    PI: 7.3082
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR08G08160.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.42.4e-1862117257
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                       k +t+t+eq e+L+ +F++++yp++ + eeLA+ l+++ +q+k+WFqN +++ kk
  LPERR08G08160.1  62 PKYQTPTTEQKERLNCAFRSCPYPDKIALEELAAALNMSSTQIKYWFQNNKTRIKK 117
                      57899************************************************997 PP
2START1142.2e-3628448725204
                      E.....EXCCTTEEEEEEESSS.....SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT......EEEEEEEEXXT CS
            START  25 s.....esengdevlqkfeeskv....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg......galqlmvaelq 99 
                            e +n++e+l +   ++      ++ a r++++v + +++lv+ lld + +W e ++    +a t++ is+g        lqlm aelq
  LPERR08G08160.1 284 MdilgvETLNYQEYLARSMATGQkpvdLKVNATRDTAIVNGSCVDLVQGLLDAN-RWRELFPgivaSANTTKIISTGpynsydKLLQLMRAELQ 376
                      3555556777777777665544458889**************************.******99999**************************** PP

                      TXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--......-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHH CS
            START 100 alsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.....sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvks 187
                      ++ p vp  d++f+R++   ++g w++vdvS+ds  +  +      +  + ++llpSg++i++++ng+skvtw++h+ +++r+ + +++sl +s
  LPERR08G08160.1 377 VMLPKVPvFDVTFLRQSVHIKRGLWYVVDVSIDSVLPSGQtsrtaAARRMEVRLLPSGCIIQEMDNGYSKVTWMMHAAYDERVMPDVYHSLFRS 470
                      *********************************987765555633444555899**************************************** PP

                      HHHHHHHHHHHHTXXXX CS
            START 188 glaegaktwvatlqrqc 204
                      g+a+ga +wva lqr+ 
  LPERR08G08160.1 471 GIAFGACRWVASLQRHS 487
                      ***************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-1637119IPR009057Homeodomain-like
SuperFamilySSF466892.13E-1651119IPR009057Homeodomain-like
PROSITE profilePS5007114.41458118IPR001356Homeobox domain
SMARTSM003891.0E-1560122IPR001356Homeobox domain
CDDcd000866.49E-1463119No hitNo description
PfamPF000467.5E-1663117IPR001356Homeobox domain
CDDcd146860.00256109146No hitNo description
PROSITE profilePS5084827.005247492IPR002913START domain
SuperFamilySSF559616.04E-19251487No hitNo description
CDDcd088752.35E-81253488No hitNo description
SMARTSM002341.8E-11256489IPR002913START domain
PfamPF018524.3E-29294487IPR002913START domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 770 aa     Download sequence    Send to blast
MDKELKVMAS YVSKLKFLLQ KDQQQEPHTA NLLGSHGSSN QDEKNDLPQG ENTVESCTRK  60
KPKYQTPTTE QKERLNCAFR SCPYPDKIAL EELAAALNMS STQIKYWFQN NKTRIKKLKM  120
NEEHEQLQKE NENLKEENTE LRNRMKNSTC RRCDLPLFQI DCDHLEDSVP MGQNKCKHGV  180
TSNLIPQAAS SLLPSSSGPV VPSSNLGSNA AFMAETVMPP SVLQPAPVIP DANLSIWHNL  240
SVNGNDDYAE RIILLDLAKR AMEEFTSLME DKENEVKILW LPHMDILGVE TLNYQEYLAR  300
SMATGQKPVD LKVNATRDTA IVNGSCVDLV QGLLDANRWR ELFPGIVASA NTTKIISTGP  360
YNSYDKLLQL MRAELQVMLP KVPVFDVTFL RQSVHIKRGL WYVVDVSIDS VLPSGQTSRT  420
AAARRMEVRL LPSGCIIQEM DNGYSKVTWM MHAAYDERVM PDVYHSLFRS GIAFGACRWV  480
ASLQRHSQFF SSLRNYIPCP GSTVTDLLRR RKILQLVKQM TSSFTAQCAT MSKAMLRDDD  540
FTYFENRIIG CAPGEPAGLV LSATTPVWFP EVNPRHLFEY LRSEQKPGQW RCLFGEQLHQ  600
SSVLPYGVPL NGSAYRMVDG LHEGHAISLI SPRKMGDNIS STLLLQEARV DLSGSLIVYA  660
GTDVNTIDSV MNGSLDPATV FLLPSGCAIL PDCNDSFPLL PAASTAGQAR RSKPGGSFVT  720
VTYQMFVSSN GTAVSVRASL DKGRDALKKA TNIFMDTVRL MADIAGDISM
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR08G08160.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650915.10.0homeobox-leucine zipper protein ROC6-like isoform X1
RefseqXP_015650916.10.0homeobox-leucine zipper protein ROC6-like isoform X1
TrEMBLA0A0D9X6C50.0A0A0D9X6C5_9ORYZ; Uncharacterized protein
STRINGLPERR08G08160.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP169781212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.11e-94HD-ZIP family protein