PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR08G04930.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 793aa MW: 85114.9 Da PI: 5.6588 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 35.2 | 2.1e-11 | 109 | 149 | 1 | 41 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-H CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLte 41 +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+ LPERR08G04930.4 109 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEP 149 688999*********************************86 PP | |||||||
2 | START | 209.4 | 1.4e-65 | 302 | 527 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE.........EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S... CS START 1 elaeeaaqelvkkalaeepgWvkss.........esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla... 77 ela +a++elv++a +ep+W++ss ++n++e+ + f+++ + ++ea+r +vv+m++ +lve+l+d++ q+ + + LPERR08G04930.4 302 ELAVAAMDELVQMARIDEPLWSSSSeeeglgigrMMLNEEEYARMFPRGLGpkqygLKSEASRHGAVVIMTHSNLVEILMDVN-QFATVFSsiv 394 57899****************************99***********998889*******************************.8888888888 PP .EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEE CS START 78 .kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghsk 163 +a+t+ev+s+g galq+m++e+q++splvp R+++fvRy++q ++g+w++vdvS+ds ++ p v +++++pSg+li++++ng+sk LPERR08G04930.4 395 sRASTHEVLSTGvagnfnGALQVMSMEFQVPSPLVPtRESYFVRYCKQNSDGTWAVVDVSLDSLRPSP----VLKCRRRPSGCLIQEMPNGYSK 484 8*****************************************************************98....7********************* PP EEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 164 vtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 vtwvehv+++++++h+++++lv+sgla+gak+wv tl+rqce+ LPERR08G04930.4 485 VTWVEHVEVDDSSVHNIYKPLVNSGLAFGAKRWVGTLDRQCER 527 *****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 9.41E-10 | 95 | 151 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.0E-13 | 97 | 151 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 4.7E-4 | 107 | 161 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.38E-10 | 108 | 151 | No hit | No description |
Pfam | PF00046 | 5.2E-9 | 109 | 149 | IPR001356 | Homeobox domain |
PROSITE profile | PS50848 | 40.678 | 293 | 530 | IPR002913 | START domain |
SuperFamily | SSF55961 | 6.11E-36 | 294 | 529 | No hit | No description |
CDD | cd08875 | 2.30E-123 | 297 | 526 | No hit | No description |
SMART | SM00234 | 5.1E-62 | 302 | 527 | IPR002913 | START domain |
Pfam | PF01852 | 4.6E-54 | 303 | 527 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 1.2E-6 | 322 | 526 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 9.16E-24 | 549 | 783 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0009913 | Biological Process | epidermal cell differentiation | ||||
GO:0048497 | Biological Process | maintenance of floral organ identity | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 793 aa Download sequence Send to blast |
MTPARRMPPV IGRNGVAYGS PSAQLPLTQA DMLDSHHLQQ ALQQQYFDQI PVTTTTAVAA 60 DSGDTMLHGR ADAGGLVDEF ESKSCSENVD GTGDGLSGDD QDPNQRPRKK RYHRHTQHQI 120 QEMEAFFKEC PHPDDKQRKE LSRELGLEPL QNQHERHENA QLRAENDKLR AENMRYKEAL 180 SSASCPNCGG PAALGEMSFD EHHLRVENAR LRDEIDRIST IAAKHVGKPI PPLAAGAFPI 240 LSSPLAAIAA GRSPLDLAGA YGATGAGHHH EMFGAGDLLR SVSSAAVAGV HPLDVDKPMI 300 VELAVAAMDE LVQMARIDEP LWSSSSEEEG LGIGRMMLNE EEYARMFPRG LGPKQYGLKS 360 EASRHGAVVI MTHSNLVEIL MDVNQFATVF SSIVSRASTH EVLSTGVAGN FNGALQVMSM 420 EFQVPSPLVP TRESYFVRYC KQNSDGTWAV VDVSLDSLRP SPVLKCRRRP SGCLIQEMPN 480 GYSKVTWVEH VEVDDSSVHN IYKPLVNSGL AFGAKRWVGT LDRQCERLAS AMASNIPNGD 540 LGVITSVEGR KSMLKLAERM VASFCGGVTA SVAHQWTTLS GSGAEDVRVM TRKSVDDPGR 600 PPGIVLNAAT SFWLPVPPAA VFDFLRDETS RSEWDILSNG GAVQEMAHIA NGRDHGNSVS 660 LLRVNSANSN QSNMLILQES CTDASGSYVV YAPVDIVAMN VVLNGGEPDY VALLPSGFAI 720 LPDGPSGNSQ AVGENGSGSS SGGGSLLTVA FQILVDSVPT AKLSLGSVAT VNSLIACTVD 780 RIKAAVCRES NPQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in protoderm differentiation and radial pattern formation during early embryogenesis. {ECO:0000269|PubMed:11846882}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR08G04930.4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB077993 | 0.0 | AB077993.1 Oryza sativa mRNA for Roc1, complete cds. | |||
GenBank | AK120496 | 0.0 | AK120496.1 Oryza sativa Japonica Group cDNA clone:J013120I03, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015650023.1 | 0.0 | homeobox-leucine zipper protein ROC1 isoform X2 | ||||
Swissprot | Q6ZAR0 | 0.0 | ROC1_ORYSJ; Homeobox-leucine zipper protein ROC1 | ||||
TrEMBL | A0A0D9X544 | 0.0 | A0A0D9X544_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR08G04930.6 | 0.0 | (Leersia perrieri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G04890.1 | 0.0 | protodermal factor 2 |
Publications ? help Back to Top | |||
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