PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR08G04930.3
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family HD-ZIP
Protein Properties Length: 793aa    MW: 85114.9 Da    PI: 5.6588
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR08G04930.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox35.22.1e-11109149141
                      TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-H CS
         Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLte 41 
                      +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+ 
  LPERR08G04930.3 109 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEP 149
                      688999*********************************86 PP
2START209.41.4e-653025271206
                      HHHHHHHHHHHHHHHHC-TT-EEEE.........EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S... CS
            START   1 elaeeaaqelvkkalaeepgWvkss.........esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla... 77 
                      ela +a++elv++a  +ep+W++ss          ++n++e+ + f+++ +      ++ea+r  +vv+m++ +lve+l+d++ q+ + +    
  LPERR08G04930.3 302 ELAVAAMDELVQMARIDEPLWSSSSeeeglgigrMMLNEEEYARMFPRGLGpkqygLKSEASRHGAVVIMTHSNLVEILMDVN-QFATVFSsiv 394
                      57899****************************99***********998889*******************************.8888888888 PP

                      .EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEE CS
            START  78 .kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghsk 163
                       +a+t+ev+s+g      galq+m++e+q++splvp R+++fvRy++q ++g+w++vdvS+ds ++ p    v +++++pSg+li++++ng+sk
  LPERR08G04930.3 395 sRASTHEVLSTGvagnfnGALQVMSMEFQVPSPLVPtRESYFVRYCKQNSDGTWAVVDVSLDSLRPSP----VLKCRRRPSGCLIQEMPNGYSK 484
                      8*****************************************************************98....7********************* PP

                      EEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
            START 164 vtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                      vtwvehv+++++++h+++++lv+sgla+gak+wv tl+rqce+
  LPERR08G04930.3 485 VTWVEHVEVDDSSVHNIYKPLVNSGLAFGAKRWVGTLDRQCER 527
                      *****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.41E-1095151IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-1397151IPR009057Homeodomain-like
SMARTSM003894.7E-4107161IPR001356Homeobox domain
CDDcd000862.38E-10108151No hitNo description
PfamPF000465.2E-9109149IPR001356Homeobox domain
PROSITE profilePS5084840.678293530IPR002913START domain
SuperFamilySSF559616.11E-36294529No hitNo description
CDDcd088752.30E-123297526No hitNo description
SMARTSM002345.1E-62302527IPR002913START domain
PfamPF018524.6E-54303527IPR002913START domain
Gene3DG3DSA:3.30.530.201.2E-6322526IPR023393START-like domain
SuperFamilySSF559619.16E-24549783No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009845Biological Processseed germination
GO:0009913Biological Processepidermal cell differentiation
GO:0048497Biological Processmaintenance of floral organ identity
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 793 aa     Download sequence    Send to blast
MTPARRMPPV IGRNGVAYGS PSAQLPLTQA DMLDSHHLQQ ALQQQYFDQI PVTTTTAVAA  60
DSGDTMLHGR ADAGGLVDEF ESKSCSENVD GTGDGLSGDD QDPNQRPRKK RYHRHTQHQI  120
QEMEAFFKEC PHPDDKQRKE LSRELGLEPL QNQHERHENA QLRAENDKLR AENMRYKEAL  180
SSASCPNCGG PAALGEMSFD EHHLRVENAR LRDEIDRIST IAAKHVGKPI PPLAAGAFPI  240
LSSPLAAIAA GRSPLDLAGA YGATGAGHHH EMFGAGDLLR SVSSAAVAGV HPLDVDKPMI  300
VELAVAAMDE LVQMARIDEP LWSSSSEEEG LGIGRMMLNE EEYARMFPRG LGPKQYGLKS  360
EASRHGAVVI MTHSNLVEIL MDVNQFATVF SSIVSRASTH EVLSTGVAGN FNGALQVMSM  420
EFQVPSPLVP TRESYFVRYC KQNSDGTWAV VDVSLDSLRP SPVLKCRRRP SGCLIQEMPN  480
GYSKVTWVEH VEVDDSSVHN IYKPLVNSGL AFGAKRWVGT LDRQCERLAS AMASNIPNGD  540
LGVITSVEGR KSMLKLAERM VASFCGGVTA SVAHQWTTLS GSGAEDVRVM TRKSVDDPGR  600
PPGIVLNAAT SFWLPVPPAA VFDFLRDETS RSEWDILSNG GAVQEMAHIA NGRDHGNSVS  660
LLRVNSANSN QSNMLILQES CTDASGSYVV YAPVDIVAMN VVLNGGEPDY VALLPSGFAI  720
LPDGPSGNSQ AVGENGSGSS SGGGSLLTVA FQILVDSVPT AKLSLGSVAT VNSLIACTVD  780
RIKAAVCRES NPQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in protoderm differentiation and radial pattern formation during early embryogenesis. {ECO:0000269|PubMed:11846882}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR08G04930.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0779930.0AB077993.1 Oryza sativa mRNA for Roc1, complete cds.
GenBankAK1204960.0AK120496.1 Oryza sativa Japonica Group cDNA clone:J013120I03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650023.10.0homeobox-leucine zipper protein ROC1 isoform X2
SwissprotQ6ZAR00.0ROC1_ORYSJ; Homeobox-leucine zipper protein ROC1
TrEMBLA0A0D9X5440.0A0A0D9X544_9ORYZ; Uncharacterized protein
STRINGLPERR08G04930.60.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2
Publications ? help Back to Top
  1. Lee JH, et al.
    Characterization of Arabidopsis and rice DWD proteins and their roles as substrate receptors for CUL4-RING E3 ubiquitin ligases.
    Plant Cell, 2008. 20(1): p. 152-67
    [PMID:18223036]
  2. Yi J, et al.
    OsMPK6 plays a critical role in cell differentiation during early embryogenesis in Oryza sativa.
    J. Exp. Bot., 2016. 67(8): p. 2425-37
    [PMID:26912801]
  3. Dou M,Cheng S,Zhao B,Xuan Y,Shao M
    The Indeterminate Domain Protein ROC1 Regulates Chilling Tolerance via Activation of DREB1B/CBF1 in Rice.
    Int J Mol Sci, 2016. 17(3): p. 233
    [PMID:26927068]
  4. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]