|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
LPERR08G04630.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
Family |
bHLH |
Protein Properties |
Length: 412aa MW: 42383.6 Da PI: 6.8337 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LPERR08G04630.1 | genome | OGE | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 12.5 | 0.00028 | 301 | 338 | 12 | 54 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
R +++ ++ L++l+ + +K + a++L +++eYIk L
LPERR08G04630.1 301 RKEKLGDRVTALQQLVSPF-----GKTDTASVLHETIEYIKFL 338
5566666777788888776.....8****************98 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 412 aa
Download sequence Send
to blast |
MADHQEMIHA ASPGSHGGDW WSAAAPPSCS APETMAGFGG WSSAAVIDGG GNASRSAAAG 60 NTTAESPGSN SLATGSSITF QEPAAGGGVA DPAAVHAQTV AGGGWNQQQT FLDGSGFHGY 120 MSSRTDHHAH HQMLNNTPSL MSHSSSNNSG VMLQDHHHHD QNYQFLSNLG FELLSSPTSP 180 YGGGGGGGFR SSLLRSLTEP AAAAAARPGS PGSLIQQYHY HQPPAMSLQP PAAGREPLQF 240 TNSTAPFWNP STGFAVAAEG TALGGAGASS AQPTTARLAA KSALEGVGDS SSIITKKAKV 300 RKEKLGDRVT ALQQLVSPFG KTDTASVLHE TIEYIKFLHD QVGALSAPYL KNRQQVPHLK 360 SSGDNDGGGG EATASKRDLT GRGLCLVPIS STFAVASETP VDFWTPFGAT FR
|
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | BT061283 | 7e-51 | BT061283.1 Zea mays full-length cDNA clone ZM_BFb0131G07 mRNA, complete cds. |