PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

AP2

Protein Properties

Length: 286aa MW: 30912.2 Da PI: 5.299

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR08G04150.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	34.6	4.7e-11	87	143	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++ k++g+++A+++d s+ g krk + g++ t+e Aa+a++ a++k++g LPERR08G04150.1 87 SRYHGVTRLKWSGKFEAHLWDnTSQvEGrKRKGKH-GSYVTEENAARAHDLAALKYWG 143 79*****************55558777778888.999999************98 PP
2	AP2	49.2	1.3e-15	188	241	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpse.ngkr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++k +grW A+I e + k ++lg+f t+ eAa+a++ a+ +l+g LPERR08G04150.1 188 SSYRGVTRRK-DGRWQARIGRIGEsR--DtKDIYLGTFETEIEAAEAYDLAAIELRG 241 67***999.9**99953323..36******99***********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	6.86E-12	87	155	No hit	No description
SuperFamily	SSF54171	2.09E-11	87	154	IPR016177	DNA-binding domain
Pfam	PF00847	3.7E-8	87	143	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	15.923	88	153	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.0E-10	88	153	IPR001471	AP2/ERF domain
SMART	SM00380	1.3E-13	88	159	IPR001471	AP2/ERF domain
CDD	cd00018	2.22E-20	188	251	No hit	No description
SuperFamily	SSF54171	3.79E-17	188	251	IPR016177	DNA-binding domain
Pfam	PF00847	2.5E-11	188	241	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	18.505	189	249	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.1E-18	189	249	IPR001471	AP2/ERF domain
SMART	SM00380	1.6E-25	189	255	IPR001471	AP2/ERF domain
PRINTS	PR00367	9.1E-8	190	201	IPR001471	AP2/ERF domain
PRINTS	PR00367	9.1E-8	231	251	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MATVLPPPSS TEGEGEPQQQ QQLGDPPGEA GAGEEIAAID KQLAVADGGG GGGDEGKAAP 60 ADAAAGGGGG GKLVAEAMRK YAAPRSSRYH GVTRLKWSGK FEAHLWDNTS QVEGRKRKGK 120 HGSYVTEENA ARAHDLAALK YWGAGPTAKL NFNISDYEKE IEIMKTMSQD EFVVYIRRQS 180 SCFSRGTSSY RGVTRRKDGR WQARIGRIGE SRDTKDIYLG TFETEIEAAE AYDLAAIELR 240 GVHAVTNFDI SNYCEDGLRK LEGSSDVPRL EGSSESCSLF LQLKEE

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269\|PubMed:21481033}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR08G04150.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by auxin. {ECO:0000269\|PubMed:21481033}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY685118	0.0	AY685118.1 Oryza sativa (japonica cultivar-group) transcription factor AP2D9 (AP2D9) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006659172.1	1e-148	PREDICTED: AP2-like ethylene-responsive transcription factor PLT2
Swissprot	Q84Z02	3e-64	CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBL	A0A0D9X4U5	0.0	A0A0D9X4U5_9ORYZ; Uncharacterized protein
STRING	LPERR08G04150.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7864	35	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72570.1	6e-66	AP2 family protein

Publications ? help Back to Top
Kitomi Y, et al. The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling. Plant J., 2011. 67(3): p. 472-84 [PMID:21481033] Li P,Xue H Structural characterization and expression pattern analysis of the rice PLT gene family. Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97 [PMID:21807632]