 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
LPERR08G03580.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
| Family |
C3H |
| Protein Properties |
Length: 366aa MW: 37870.7 Da PI: 7.2991 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| LPERR08G03580.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 31 | 4.3e-10 | 85 | 110 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
+kt+lC+ f++ GtC+y +C+FaHg+
LPERR08G03580.1 85 FKTKLCCKFRA-GTCPYVTNCNFAHGM 110
69*********.*************95 PP
|
| 2 | zf-CCCH | 18.1 | 4.6e-06 | 171 | 196 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
yk + C+ f+ C+yGd C+F H+
LPERR08G03580.1 171 YKGRHCKKFYTEEGCPYGDACTFLHD 196
78888********************7 PP
|
| 3 | zf-CCCH | 43.3 | 5.8e-14 | 245 | 270 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
+kt++C+ + tG+C++G++C+FaHg
LPERR08G03580.1 245 WKTRICNKWEMTGYCPFGSKCHFAHG 270
8************************8 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| Gene3D | G3DSA:4.10.1000.10 | 2.0E-14 | 82 | 117 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 3.79E-8 | 82 | 115 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.028 | 84 | 111 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.0014 | 84 | 110 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 2.3E-7 | 85 | 110 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.629 | 170 | 198 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.3 | 170 | 197 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.3E-8 | 170 | 198 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 3.53E-7 | 170 | 198 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.9E-17 | 239 | 274 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 5.23E-10 | 240 | 275 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 7.1E-9 | 244 | 271 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 15.422 | 244 | 272 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 6.7E-11 | 245 | 270 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 366 aa
Download sequence Send
to blast |
MDYTNAIHII PDAAGPDAWA NAAAAAGGDG GIWATEDDYN SQWNESRAGS EQPPPGKKPR 60
GASSSGGGGG GDAGSKSRAI GKMFFKTKLC CKFRAGTCPY VTNCNFAHGM EELRKPPPNW 120
QEIVAAHEEA TETREEHQIP IMTSSGPHGG GGGGGGGGAA GDSGGGGGRA YKGRHCKKFY 180
TEEGCPYGDA CTFLHDEQSK ARESVAISLS PSVGGGGGGG SYNSGAVAVG AAAANGVNMQ 240
KPSNWKTRIC NKWEMTGYCP FGSKCHFAHG AAELHKYGGG LVDLDSRDAA PTPDSKQVAA 300
SGKAPAETAA ASNAAPPHAD VYHLGMQAQR STIVGQRSGQ LQRPIQKWKG PDKISRIYGD 360
WIDETD
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | FP098377 | 1e-116 | FP098377.1 Phyllostachys edulis cDNA clone: bphyem211c22, full insert sequence. |
