PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR08G03580.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C3H
Protein Properties Length: 366aa    MW: 37870.7 Da    PI: 7.2991
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR08G03580.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH314.3e-1085110127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +kt+lC+ f++ GtC+y  +C+FaHg+
  LPERR08G03580.1  85 FKTKLCCKFRA-GTCPYVTNCNFAHGM 110
                      69*********.*************95 PP
2zf-CCCH18.14.6e-06171196126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      yk + C+ f+    C+yGd C+F H+
  LPERR08G03580.1 171 YKGRHCKKFYTEEGCPYGDACTFLHD 196
                      78888********************7 PP
3zf-CCCH43.35.8e-14245270126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      +kt++C+ +  tG+C++G++C+FaHg
  LPERR08G03580.1 245 WKTRICNKWEMTGYCPFGSKCHFAHG 270
                      8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.0E-1482117IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-882115IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.02884111IPR000571Zinc finger, CCCH-type
SMARTSM003560.001484110IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-785110IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.629170198IPR000571Zinc finger, CCCH-type
SMARTSM003560.3170197IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-8170198IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-7170198IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-17239274IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-10240275IPR000571Zinc finger, CCCH-type
SMARTSM003567.1E-9244271IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.422244272IPR000571Zinc finger, CCCH-type
PfamPF006426.7E-11245270IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MDYTNAIHII PDAAGPDAWA NAAAAAGGDG GIWATEDDYN SQWNESRAGS EQPPPGKKPR  60
GASSSGGGGG GDAGSKSRAI GKMFFKTKLC CKFRAGTCPY VTNCNFAHGM EELRKPPPNW  120
QEIVAAHEEA TETREEHQIP IMTSSGPHGG GGGGGGGGAA GDSGGGGGRA YKGRHCKKFY  180
TEEGCPYGDA CTFLHDEQSK ARESVAISLS PSVGGGGGGG SYNSGAVAVG AAAANGVNMQ  240
KPSNWKTRIC NKWEMTGYCP FGSKCHFAHG AAELHKYGGG LVDLDSRDAA PTPDSKQVAA  300
SGKAPAETAA ASNAAPPHAD VYHLGMQAQR STIVGQRSGQ LQRPIQKWKG PDKISRIYGD  360
WIDETD
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR08G03580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0983771e-116FP098377.1 Phyllostachys edulis cDNA clone: bphyem211c22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003573458.10.0zinc finger CCCH domain-containing protein 56
SwissprotQ84UQ30.0C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A0D9X4M90.0A0A0D9X4M9_9ORYZ; Uncharacterized protein
STRINGLPERR08G03580.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66153853
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.13e-90C3H family protein