PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR08G03490.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family B3
Protein Properties Length: 262aa    MW: 28476.6 Da    PI: 5.0317
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR08G03490.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B386.62.1e-2750142189
                      EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                      f+kv tpsdv+k++rlv+pk++ae++        ++ ++l +ed+ g  W+++++y+++s++yv+tkGW++Fv+a +L +gD+v F+++g+ +
  LPERR08G03490.1  50 FEKVVTPSDVGKLNRLVVPKQHAERFfpamAAAAATATQLCFEDRAGTAWRFRYSYWGSSQSYVITKGWSRFVRAARLSAGDTVSFSRSGNGD 142
                      99**************************99555567789************************************************988754 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-3644142IPR015300DNA-binding pseudobarrel domain
CDDcd100171.29E-2348138No hitNo description
SuperFamilySSF1019366.54E-2748142IPR015300DNA-binding pseudobarrel domain
PfamPF023625.9E-2550143IPR003340B3 DNA binding domain
SMARTSM010195.8E-1850146IPR003340B3 DNA binding domain
PROSITE profilePS5086313.45150151IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MDLTLGRQVL QVVEEEEDQE EEEDQSPAPP PRRQGVVTGA GGEEIREHMF EKVVTPSDVG  60
KLNRLVVPKQ HAERFFPAMA AAAATATQLC FEDRAGTAWR FRYSYWGSSQ SYVITKGWSR  120
FVRAARLSAG DTVSFSRSGN GDGAAAGGQY RYFIDYRHCH RRGSAAIDFS SAAAMSPAAA  180
TMAWPYFGRP VLQTTAAPVI YGGGHTVAPP PAVEVGPTGQ RSFRLFGVNF ECGGEAAAAA  240
EVEDDGDRRG EEMELVMWTT NN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A5e-45461574111B3 domain-containing transcription factor NGA1
5os9_B5e-45461574111B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR08G03490.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649372.11e-82putative B3 domain-containing protein Os08g0157700
SwissprotQ7EZD51e-83Y8577_ORYSJ; Putative B3 domain-containing protein Os08g0157700
TrEMBLA0A0D9X4L70.0A0A0D9X4L7_9ORYZ; Uncharacterized protein
STRINGLPERR08G03490.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141642426
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.15e-43B3 family protein