 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
LPERR08G03020.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
| Family |
MYB |
| Protein Properties |
Length: 353aa MW: 38799.3 Da PI: 6.432 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| LPERR08G03020.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 54.4 | 2.8e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg W++eEde+l+++++ +G g+W+ ++++ g+ R++k+c++rw +yl
LPERR08G03020.1 14 RGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYL 61
788*******************************************97 PP
|
| 2 | Myb_DNA-binding | 54.2 | 3.4e-17 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rgr+++eE++l++ +++ G++ W+ Ia++++ gRt++++k++w+++
LPERR08G03020.1 67 RGRFSAEEEKLIISLHAIVGNR-WAHIASHLP-GRTDNEIKNYWNSW 111
89********************.*********.************98 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:1901430 | Biological Process | positive regulation of syringal lignin biosynthetic process |
| GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 353 aa
Download sequence Send
to blast |
MGHHSCCNQQ KVKRGLWSPE EDEKLIRYIT THGYGCWSEV PEKAGLQRCG KSCRLRWINY 60
LRPDIRRGRF SAEEEKLIIS LHAIVGNRWA HIASHLPGRT DNEIKNYWNS WIKKKIRKPP 120
AAVSTTTSSA SVTTTTSPNN NNPPPPCSTA TSDHQATPFA PAFAGATAAT DHHQLQLDAI 180
INHNLLSLPP KLAAGDSHHC PLFMFDTVSP PSPSPALIPT HHHHPFIASF TAAMSAAADT 240
PISYLPPLID GMVDNIGSSI DDDASNHHSN QVAAGMGNCN GGGGGGCHGL MYEQMNEKQM 300
ELGEEQEQNN QWDEEEAEHL LMWDQEVLTS SNLEVMQSGA HHSLLFMGPN HHD
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that coordinates a small network of downstream target genes required for several aspects of plant growth and development, such as xylem formation and xylem cell differentiation, and lateral root formation (PubMed:22708996). Regulates a specific set of target genes by binding DNA to the AC cis-element 5'-ACCTAC-3' (PubMed:23741471). Functions as a transcriptional regulator of stomatal closure. Plays a role the regulation of stomatal pore size independently of abscisic acid (ABA) (PubMed:16005292). Required for seed coat mucilage deposition during the development of the seed coat epidermis (PubMed:19401413). Involved in the induction of trichome initiation and branching by positively regulating GL1 and GL2. Required for gibberellin (GA) biosynthesis and degradation by positively affecting the expression of the enzymes that convert GA9 into the bioactive GA4, as well as the enzymes involved in the degradation of GA4 (PubMed:28207974). {ECO:0000269|PubMed:16005292, ECO:0000269|PubMed:19401413, ECO:0000269|PubMed:22708996, ECO:0000269|PubMed:23741471, ECO:0000269|PubMed:28207974}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK111808 | 1e-147 | AK111808.1 Oryza sativa Japonica Group cDNA clone:J013114D05, full insert sequence. |
| GenBank | AK112117 | 1e-147 | AK112117.1 Oryza sativa Japonica Group cDNA clone:002-129-C03, full insert sequence. |
