PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR08G02370.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family HD-ZIP
Protein Properties Length: 781aa    MW: 84527.5 Da    PI: 6.5085
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR08G02370.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.29.2e-21133188156
                      TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      +++ +++t++q++eLe++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  LPERR08G02370.1 133 KKRYHRHTQHQIQELESFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 188
                      688999***********************************************999 PP
2START2052.9e-643065301206
                      HHHHHHHHHHHHHHHHC-TT-EEEE..EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
            START   1 elaeeaaqelvkkalaeepgWvkss..esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 
                      ela +a++elv++a++++p+Wv     e +n+de+ + f+++ +       +e +r+s+vv+m+++ lve l+d++ qW+  +     + +tl+
  LPERR08G02370.1 306 ELAVAAMEELVRMAQLGDPLWVPAIggEALNEDEYARAFPRGLGpkspdLLSESSRESAVVIMNHVSLVEMLMDVS-QWNSLFSnivsRSATLQ 398
                      57899**********************************998889****9**************************.**999999999****** PP

                      EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--...-TTSEE-EESSEEEEEEEECTCEEEEEEEE CS
            START  84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe..sssvvRaellpSgiliepksnghskvtwve 168
                      v+s+g      galqlm+ae+q++splvp R+  f+Ry++q+++g+w++vdvS+d+ ++ +     + +R +++pSg+li++++ng+skvtwve
  LPERR08G02370.1 399 VLSTGvagnhnGALQLMSAEFQMPSPLVPtRETHFLRYCKQHPDGTWAVVDVSLDNLRSATGiaAVPAARHRRRPSGCLIHEMPNGYSKVTWVE 492
                      *************************************************************99999**************************** PP

                      -EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
            START 169 hvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                      hv+ +++++h l++++v+sg+a+ga++wvatl+rqce+
  LPERR08G02370.1 493 HVEADDSMVHDLYKPVVNSGVAFGARRWVATLERQCER 530
                      ************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.3E-23117188IPR009057Homeodomain-like
SuperFamilySSF466892.26E-20119190IPR009057Homeodomain-like
PROSITE profilePS5007117.427130190IPR001356Homeobox domain
SMARTSM003892.3E-20131194IPR001356Homeobox domain
CDDcd000861.03E-19132191No hitNo description
PfamPF000463.3E-18133188IPR001356Homeobox domain
PROSITE patternPS000270165188IPR017970Homeobox, conserved site
PROSITE profilePS5084844.868297533IPR002913START domain
SuperFamilySSF559615.5E-34298532No hitNo description
CDDcd088755.17E-118301529No hitNo description
SMARTSM002348.8E-63306530IPR002913START domain
PfamPF018528.5E-54307530IPR002913START domain
Gene3DG3DSA:3.30.530.202.0E-4373529IPR023393START-like domain
SuperFamilySSF559614.76E-21554762No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 781 aa     Download sequence    Send to blast
MARWMVMTRR VCDQGEMMIP GRNLSPAMIG RNGVGGVAYA SSSSALSLGQ SLLDGHHHQL  60
PSVLQQHHHN GQHLMDQHQH QLPPQATTTS ESDARNPRDE LEMSKSGGSD NLESGGGGGG  120
SGEDQDPNQR PRKKRYHRHT QHQIQELESF FKECPHPDDK QRKELSRELG LEPLQVKFWF  180
QNKRTQMKTQ HERHENNALR AENDKLRAEN MRYKEALANA SCPNCGGPAA IGEMSFDEHH  240
LRLENARLRD EIDRISAIAA KYVGKPAVAV SAAYPPLPPP PPSNHHLGMP TADVFSADFD  300
KSLVIELAVA AMEELVRMAQ LGDPLWVPAI GGEALNEDEY ARAFPRGLGP KSPDLLSESS  360
RESAVVIMNH VSLVEMLMDV SQWNSLFSNI VSRSATLQVL STGVAGNHNG ALQLMSAEFQ  420
MPSPLVPTRE THFLRYCKQH PDGTWAVVDV SLDNLRSATG IAAVPAARHR RRPSGCLIHE  480
MPNGYSKVTW VEHVEADDSM VHDLYKPVVN SGVAFGARRW VATLERQCER LASAMATAAN  540
VVGGDIGGVI TTAEGRRSMM KLAERMVASF CGGVTASTTH QWTTLSGSGA EDVRVMTRKS  600
VDDPGRPPGI ILNAATSFWL PVPPSRVFDF LRDDTTRSEW DILSNGGVVQ EMAHIANGRD  660
HGNAVSLLRV NECCTDATGS YVIYAPVDVV AMNVVLNGGD PDYVALLPSG FAILPDGPDA  720
GGGSLLTVAF QILVDSVPTA KLSLGSVATV NSLIACTVER IKAAIAGGAD NASALAPPCP  780
R
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR08G02370.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648539.10.0homeobox-leucine zipper protein ROC7
SwissprotA3BPF20.0ROC7_ORYSJ; Homeobox-leucine zipper protein ROC7
TrEMBLA0A0D9X4610.0A0A0D9X461_9ORYZ; Uncharacterized protein
STRINGLPERR08G02370.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79938147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2