PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR08G02350.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C3H
Protein Properties Length: 943aa    MW: 104251 Da    PI: 9.0243
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR08G02350.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.63.2e-06312331626
                      -SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                      C++f + G C++G++C+++H+
  LPERR08G02350.1 312 CHDFVK-GRCSRGANCRYNHD 331
                      ******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.427221248IPR000571Zinc finger, CCCH-type
SMARTSM003560.0039222247IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-4226246IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.084306333IPR000571Zinc finger, CCCH-type
SMARTSM003560.17306332IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.671365392IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-7366390IPR000571Zinc finger, CCCH-type
SMARTSM003569.1E-6366391IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-4369391IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 943 aa     Download sequence    Send to blast
MTGEARKERS KWDAKGPPDI VEISEDESLP LNTDDQHKSG DLLHPNRDFA HGKDSQTGES  60
VNLKSAVSMH HGSAGHEQDR ADGHNKDIKE RSSKASSERL HPLRGDEDHN KNDWHSRGFE  120
KATGNQGMSR YTDDRRRSDG WGTTISRGYS SRISSGPDAW KQRSRSPLSP RGGWNRPRRN  180
RSRSRSRSRS RSRSIGRGRG RSRSRSPYFN DRGSEWRLDR GRPALPCRDF VAGRCRRGSN  240
CRFPHEDGVR RQFDEHYPID SRERYGHQNR EFMDSREQDD YIRSRPSRGG HYDEGTWERS  300
EPRREYRSTM QCHDFVKGRC SRGANCRYNH DDSTSHSGWR DEVRDSAIGR GGPDASFGSR  360
VDHRRTNKNP CKFFANGHCR RGQNCPYLHE EASQSQTGLS APDDPLGYTG GTTTRGNYLN  420
WSEQNNAVQA SSHVLSRDDR ENPVPQGISR NDPRYENKNR HPKDPGSSQY QIFPQEDFGS  480
LEQKKSEIAA SQPPHFLPSI QTDAKIINID NVSETGGQSG PGAIGNLSMQ SGMHVANLVG  540
GQNLDQKAES QDAIAQISAA PSLPGATQLQ NTTSSVPFNG QLQQSDFSLH PNRQDQFVVP  600
HATTNNSAPV QSQPVAPYMG HSQHSYIMGA QALPDLSAHN GHVFSVAGQV PQNLPTIMHT  660
GQAQAANDTP NPGRDSGDQS FQNTHNFQPV APNELTQNQT LQGLSVLANS SSVDMAGAPL  720
SHNAVSSLTA SLAQYFGPVL TVDTTGQQSS QPDPNSSLMN NSSAAPQAVQ PNHWPWLQQA  780
GTIQPAHTVQ SEQPAPQTFQ APMASGSSNG PLPLPYSVAP IAPAAVLAGH ETTPAENKKE  840
PKDTDAEALE DGENKKGKDS KALKMFKLAL ADFVKDALKP TWKEGQMSRE IHKTIVKKVV  900
DKVTTTVENT PQTKDKIDIY MSYSREKLNK LVQAYVGKYA KKD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1182192RSRSRSRSRSR
2184192RSRSRSRSR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR08G02350.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1004550.0AK100455.1 Oryza sativa Japonica Group cDNA clone:J023091E18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650360.10.0zinc finger CCCH domain-containing protein 55
RefseqXP_025883327.10.0zinc finger CCCH domain-containing protein 55
SwissprotQ6YYC00.0C3H55_ORYSJ; Zinc finger CCCH domain-containing protein 55
TrEMBLA0A0D9X4590.0A0A0D9X459_9ORYZ; Uncharacterized protein
STRINGLPERR08G02350.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77663443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.18e-11C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]