PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR08G01030.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 295aa    MW: 32550.3 Da    PI: 6.6929
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR08G01030.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.31.5e-09163203954
                      HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       r RR+ri +++  L++l+P       +K++ a++L +A++YIk L
  LPERR08G01030.1 163 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIRYIKFL 203
                      699*****************87.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1014476.02E-63389No hitNo description
PROSITE profilePS5088815.459154203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.97E-15159214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-13160212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.5E-15160209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.4E-7164203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.19E-6177208No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010197Biological Processpolar nucleus fusion
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MDNMAHNNSS SSSSWDLDMS LGSHHHPLLF DHPPPPPPPP PPPLPFDLHH HPLDPSPSSL  60
FPHHHLHPLD LDHHHHRTRF VIEEHHQHQQ EEEEIQHHQQ HQEEAGDQEQ QQQVGDQEEE  120
LGAMKEMMYR IAAMQPVDID PATIKKPRRR NVRISDDPQS VAARHRRERI SERIRILQRL  180
VPGGTKMDTA SMLDEAIRYI KFLKRQVQDL QHPNPPPAAA APAGPSSSAA VVGPPGRPFL  240
PMAGPMIDWV GLTRPMDIHG PTSSSSSSSM GGALGFGFGG GGGGGGGQSS HHGMH
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR08G01030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2410051e-97AK241005.1 Oryza sativa Japonica Group cDNA, clone: J065053F23, full insert sequence.
GenBankAP0044621e-97AP004462.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0450B04.
GenBankAP0045841e-97AP004584.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0007D08.
GenBankAP0149641e-97AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankBT0650181e-97BT065018.1 Zea mays full-length cDNA clone ZM_BFc0135I21 mRNA, complete cds.
GenBankCP0126161e-97CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
GenBankEU9741971e-97EU974197.1 Zea mays clone 442660 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015695922.17e-82PREDICTED: LOW QUALITY PROTEIN: transcription factor HEC3-like
TrEMBLA0A0D9X3P10.0A0A0D9X3P1_9ORYZ; Uncharacterized protein
STRINGLPERR08G01030.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90513246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09750.17e-37bHLH family protein