PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR07G20810.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family HSF
Protein Properties Length: 319aa    MW: 35320.7 Da    PI: 6.6784
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR07G20810.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.52.8e-35351272103
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+y++++d+ +++++sw e+ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F+kg k+ll 
  LPERR07G20810.1  35 FLTKTYQLVDDPCTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVADK---------WEFANEFFRKGAKHLLA 119
                      9****************************************************************999.........***************** PP

                      XXXXXXXX CS
     HSF_DNA-bind  96 kikrkkse 103
                      +i+r+ks+
  LPERR07G20810.1 120 DIHRRKSS 127
                      *****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.0E-3726118IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.5E-5831124IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.5E-3332124IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.3E-193558IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.6E-3135124IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-197385IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407498IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-198698IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MAFLVERCGE MVSMETMSPG GGGAAAAAKA VPAPFLTKTY QLVDDPCTDH IVSWGEDDTT  60
FVVWRPPEFA RDLLPNYFKH NNFSSFVRQL NTYGFRKIVA DKWEFANEFF RKGAKHLLAD  120
IHRRKSSQPP PPPPAMPMPM THQPYHHHLH HHHINPFSPP SLPAPAPYHG HYQDEPRGVA  180
GDGGEGGVDF LAALSEDNRQ LRRRNSLLLS ELAHMKKLYN DIIYFLQNHV APVTTSNNSP  240
SPPTMMMPPH AGGASCRLME LDSPDDDDHS PKTEDGGGET VKLFGVALLH GGGGGRKKKK  300
RAAAQRDDGD ELHDEESEV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-222212417129Heat shock factor protein 1
5d5v_B1e-222212417129Heat shock factor protein 1
5d5v_D1e-222212417129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1295300RKKKKR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269|PubMed:16202242}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR07G20810.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0639521e-135AK063952.1 Oryza sativa Japonica Group cDNA clone:001-123-F07, full insert sequence.
GenBankAY3444941e-135AY344494.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645691.11e-126heat stress transcription factor B-4b
SwissprotQ7XHZ01e-127HFB4B_ORYSJ; Heat stress transcription factor B-4b
TrEMBLA0A0D9X2250.0A0A0D9X225_9ORYZ; Uncharacterized protein
STRINGLPERR07G20810.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.17e-72heat shock transcription factor B4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]