PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR07G20450.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

GeBP

Protein Properties

Length: 373aa MW: 40115.2 Da PI: 5.8293

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR07G20450.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	107.4	1e-33	62	161	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifel 91 lfqrlw+eeDeiv+L+G+ +f+a +g+ +++ d+d fye +++++++ +sksqlveK+rrLK+K++++v++ + sg+ ++f+++h+q ife+ LPERR07G20450.1 62 LFQRLWTEEDEIVILRGFAEFTAARGTafASHQyDTDPFYEDMRGRLQLGFSKSQLVEKLRRLKRKYRNCVSRlRGSGNAFAFRSPHEQAIFEI 155 79**********************99877778***********************************8889************* PP DUF573 92 skkiWg 97 ++ iW+ LPERR07G20450.1 156 ARNIWR 161 ***8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	2.3E-30	63	160	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MSFPDADADD ESEDGGDFID PSFPNLTSSS AAAAAVAPAA AGSGGGGVGS SSGGGGGERR 60 PLFQRLWTEE DEIVILRGFA EFTAARGTAF ASHQYDTDPF YEDMRGRLQL GFSKSQLVEK 120 LRRLKRKYRN CVSRLRGSGN AFAFRSPHEQ AIFEIARNIW RPANKHGRDG DSDDEDAAAP 180 VATAAVAVAP AAVPVVSTSP NGEVKSPTSG RQRRRRRAVA DFAATASPAT TPVTNMVQPL 240 QPLQVPVSVP VKMDDTLPAL SQSQSQSTMP ITVTMERSEP LGLPVMAPQS AVLDAEKSFL 300 TPLFKEMVRA VINIGSNPFG VQLPEPPHGL TMEGEKWRKQ RILELEVYLK RIELLQDQVK 360 ATLEELKSSA PGT

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MSFPDADADD ESEDGGDFID PSFPNLTSSS AAAAAVAPAA AGSGGGGVGS SSGGGGGERR  60
PLFQRLWTEE DEIVILRGFA EFTAARGTAF ASHQYDTDPF YEDMRGRLQL GFSKSQLVEK  120
LRRLKRKYRN CVSRLRGSGN AFAFRSPHEQ AIFEIARNIW RPANKHGRDG DSDDEDAAAP  180
VATAAVAVAP AAVPVVSTSP NGEVKSPTSG RQRRRRRAVA DFAATASPAT TPVTNMVQPL  240
QPLQVPVSVP VKMDDTLPAL SQSQSQSTMP ITVTMERSEP LGLPVMAPQS AVLDAEKSFL  300
TPLFKEMVRA VINIGSNPFG VQLPEPPHGL TMEGEKWRKQ RILELEVYLK RIELLQDQVK  360
ATLEELKSSA PGT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR07G20450.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK068356	1e-154	AK068356.1 Oryza sativa Japonica Group cDNA clone:J013146D06, full insert sequence.
GenBank	AP003749	1e-154	AP003749.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1136_D11.
GenBank	AP014963	1e-154	AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBank	CP012615	1e-154	CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015645065.1	1e-168	probable transcription factor At5g28040
TrEMBL	A0A0D9X1X6	0.0	A0A0D9X1X6_9ORYZ; Uncharacterized protein
STRING	LPERR07G20450.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP974	37	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04930.2	9e-34	DNA-binding storekeeper protein-related transcriptional regulator