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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LPERR07G20450.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family |
GeBP |
Protein Properties |
Length: 373aa MW: 40115.2 Da PI: 5.8293 |
Description |
GeBP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LPERR07G20450.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF573 | 107.4 | 1e-33 | 62 | 161 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifel 91
lfqrlw+eeDeiv+L+G+ +f+a +g+ +++ d+d fye +++++++ +sksqlveK+rrLK+K++++v++ + sg+ ++f+++h+q ife+
LPERR07G20450.1 62 LFQRLWTEEDEIVILRGFAEFTAARGTafASHQyDTDPFYEDMRGRLQLGFSKSQLVEKLRRLKRKYRNCVSRlRGSGNAFAFRSPHEQAIFEI 155
79************************99877778***************************************8889***************** PP
DUF573 92 skkiWg 97
++ iW+
LPERR07G20450.1 156 ARNIWR 161
*****8 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 373 aa
Download sequence Send
to blast |
MSFPDADADD ESEDGGDFID PSFPNLTSSS AAAAAVAPAA AGSGGGGVGS SSGGGGGERR 60 PLFQRLWTEE DEIVILRGFA EFTAARGTAF ASHQYDTDPF YEDMRGRLQL GFSKSQLVEK 120 LRRLKRKYRN CVSRLRGSGN AFAFRSPHEQ AIFEIARNIW RPANKHGRDG DSDDEDAAAP 180 VATAAVAVAP AAVPVVSTSP NGEVKSPTSG RQRRRRRAVA DFAATASPAT TPVTNMVQPL 240 QPLQVPVSVP VKMDDTLPAL SQSQSQSTMP ITVTMERSEP LGLPVMAPQS AVLDAEKSFL 300 TPLFKEMVRA VINIGSNPFG VQLPEPPHGL TMEGEKWRKQ RILELEVYLK RIELLQDQVK 360 ATLEELKSSA PGT
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK068356 | 1e-154 | AK068356.1 Oryza sativa Japonica Group cDNA clone:J013146D06, full insert sequence. |
GenBank | AP003749 | 1e-154 | AP003749.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1136_D11. |
GenBank | AP014963 | 1e-154 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. |
GenBank | CP012615 | 1e-154 | CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT3G04930.2 | 9e-34 | DNA-binding storekeeper protein-related transcriptional regulator |