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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LPERR07G20030.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family |
bHLH |
Protein Properties |
Length: 262aa MW: 29505.1 Da PI: 7.2562 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LPERR07G20030.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 15.3 | 3.6e-05 | 36 | 72 | 1 | 41 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCH CS
HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKa 41
+r ++erE+ Rd+ N+ f eL ll ++ + + Ka
LPERR07G20030.1 36 KRIHKSEREKLKRDKQNDLFTELGNLLEPD----RQNNGKA 72
68899**********************996....3444455 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0010106 | Biological Process | cellular response to iron ion starvation |
GO:0055072 | Biological Process | iron ion homeostasis |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 262 aa
Download sequence Send
to blast |
MVPRDRVNAT AAAGAGGERI AVQRPKVNKK CEKVPKRIHK SEREKLKRDK QNDLFTELGN 60 LLEPDRQNNG KACVLGETTR ILKDLFSQVE TLRKENSALK NESHYVALER NELHDDNSML 120 RSEILELQNE LRTRMEGNPV WSHVNTRPAP RVPYPTSGVF PVQHLPHLPV TTTAAFPQQQ 180 AVVIEQHYPA TPRELQLFPE SATSEDSEPS QENGISDNVT RSQARYPTPT ATLPVNLFPV 240 LPGTQDQQCS NVTREEDHIG RS
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that plays a positive role in salt stress tolerance. Interacts with TIFY11A/JAZ9 and binds to the promoter of some potassium ion transporter genes to regulate potassium homeostasis during salt stress. {ECO:0000269|PubMed:25617318}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK070963 | 0.0 | AK070963.1 Oryza sativa Japonica Group cDNA clone:J023068N18, full insert sequence. |
GenBank | HQ858856 | 0.0 | HQ858856.1 Oryza sativa Japonica Group isolate UT1619 bHLH transcription factor mRNA, partial cds. |
Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] - Yilmaz A, et al.
GRASSIUS: a platform for comparative regulatory genomics across the grasses. Plant Physiol., 2009. 149(1): p. 171-80 [PMID:18987217] - Wu H,Ye H,Yao R,Zhang T,Xiong L
OsJAZ9 acts as a transcriptional regulator in jasmonate signaling and modulates salt stress tolerance in rice. Plant Sci., 2015. 232: p. 1-12 [PMID:25617318]
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