PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

LPERR07G18260.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

C2H2

Protein Properties

Length: 328aa MW: 34923.6 Da PI: 7.3081

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR07G18260.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.7	4.2e-05	60	81	3	23
ETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 CpdCgksFsrksnLkrHirt.H 23 C+ Cgk Fs++ L H r+ H LPERR07G18260.1 60 CGVCGKLFSSWRKLFGHVRRrH 81 *******************999 PP
2	zf-C2H2	14.9	7.8e-05	215	237	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+Cp Cgk+F + L H +H LPERR07G18260.1 215 YECPGCGKVFASYQALGGHRASH 237 99**********99999998887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	0.31	58	81	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.058	58	86	IPR007087	Zinc finger, C2H2
Pfam	PF13912	0.1	58	83	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.12E-7	59	81	No hit	No description
PROSITE pattern	PS00028	0	60	81	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.12E-7	210	237	No hit	No description
Pfam	PF13912	1.7E-11	214	239	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.05	215	237	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.45	215	242	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	217	237	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MAAAEEDDDE VRRLSNGGGV VGYGLRENPK KTRRLSDFAG GDGEEEERGD GGGGGEVRAC 60 GVCGKLFSSW RKLFGHVRRR HESAGEEEAD AAAVTVITPP PRRRRRSMRV AAPPPAPPPP 120 PTTTVEDVAL GLLMLSRDTG LWRSPPSYGH NSDEDSPLPH HAGDVTVTKS RRRRTASYNY 180 YAPPPPNPST SPSPKRRQQR AAATAAAPAA KRTRYECPGC GKVFASYQAL GGHRASHKRI 240 NTSCSAPKLS THSPDSVVAA AGIGGDEDDS KANKSSPAEE EKFEFDGELY AEMEMEQHHS 300 PATAAALVAG FLDLNYPPAA TASSSEVA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR07G18260.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015646241.1	5e-75	uncharacterized protein LOC107278250
TrEMBL	A0A0D9X144	0.0	A0A0D9X144_9ORYZ; Uncharacterized protein
STRING	LPERR07G18260.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3861	35	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35280.1	2e-09	C2H2-like zinc finger protein