PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR07G18170.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family WRKY
Protein Properties Length: 418aa    MW: 44915.6 Da    PI: 5.3077
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR07G18170.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.15e-30156212259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      dDgynWrKYGqK vkg efp+sYY+Ct+ +C+v+++ve+sa d+++v+i+Y+g+H+he
  LPERR07G18170.1 156 DDGYNWRKYGQKAVKGGEFPKSYYKCTHLNCSVRRNVEHSA-DGRIVQIIYRGQHTHE 212
                      8****************************************.***************8 PP
2WRKY104.17.5e-33324382159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC vkk+vers e+p++v++tYeg+H h+
  LPERR07G18170.1 324 LDDGYRWRKYGQKVVKGNPYPRSYYKCTYPGCDVKKQVERSVEEPNAVITTYEGKHIHD 382
                      59*******************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-26148214IPR003657WRKY domain
SuperFamilySSF1182906.02E-24153214IPR003657WRKY domain
SMARTSM007745.7E-32155213IPR003657WRKY domain
PROSITE profilePS5081122.756156214IPR003657WRKY domain
PfamPF031061.0E-22156212IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.7E-35311384IPR003657WRKY domain
SuperFamilySSF1182902.09E-29317384IPR003657WRKY domain
PROSITE profilePS5081134.888319384IPR003657WRKY domain
SMARTSM007741.3E-38324383IPR003657WRKY domain
PfamPF031062.2E-25325381IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MAAAQRVPGG GRSGSGSGSG GPRFPAAVES LLDGGGGGGG GGGWLSPPPK ISGGAVILGY  60
TQGNFEVFSE QDLAPLTAEE VHQSKCITVI EEENTSFSHF GTSALISQHV SCSAVNVTPL  120
QEILTLPSQM SNANTESSGV LQGLPTSSVV LDRPADDGYN WRKYGQKAVK GGEFPKSYYK  180
CTHLNCSVRR NVEHSADGRI VQIIYRGQHT HERPTKRRFK DCGGVLDDLD DFDGNTGTSV  240
RSQADNQDYC AKPIIPNGAM LGPLVEKMEE GDDQLPGSSN NQEECDDEVR ADDGAAGDAS  300
ATERNMPAPG QKIIVSTTSE VDLLDDGYRW RKYGQKVVKG NPYPRSYYKC TYPGCDVKKQ  360
VERSVEEPNA VITTYEGKHI HDVPAARNKS HEVADASLLQ NTKSNAYCTE QAYRTITC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-36156385878Probable WRKY transcription factor 4
2lex_A8e-36156385878Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR07G18170.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646950.20.0probable WRKY transcription factor 3
TrEMBLA0A0D9X1340.0A0A0D9X134_9ORYZ; Uncharacterized protein
STRINGLPERR07G18170.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134538122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-72WRKY DNA-binding protein 3