PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR07G17940.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 190aa    MW: 20012.5 Da    PI: 8.0883
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR07G17940.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.000174264123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++Cp Cgk F +   L  H  +H
  LPERR07G17940.1 42 FRCPLCGKAFASYQALGGHKASH 64
                     89**********99998888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139128.8E-134166IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.6794269IPR007087Zinc finger, C2H2
SuperFamilySSF576672.07E-84264No hitNo description
SMARTSM003550.0114264IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804464IPR007087Zinc finger, C2H2
SuperFamilySSF576672.07E-898125No hitNo description
PfamPF139122.1E-7102125IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.014103130IPR007087Zinc finger, C2H2
SMARTSM003554.6103125IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280105125IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MDQDGGDLIS LCLMALAAAV RGENTVPVAA SSAVKPPEEL HFRCPLCGKA FASYQALGGH  60
KASHRKPATT SSTDQQEHRG VVVSAPAPEL VTAAASADGQ GRHVCSLCRR GFATGQALGG  120
HKRFHYLHGP SVSATVSSCA GTASVCAFDL NVAPVKEIAG EQRRDEEEEE GEKRPLPAKK  180
PRRRPSDHPL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in abscisic acid (ABA) signaling. Required for the regulation of the cross-talk between NADPH oxidase, hydrogen peroxide and MAP kinase in ABA signaling. Regulates the expression of the NADPH oxidase genes RBOHB and RBOHE, and the MAPK genes MPK1, MPK4, MPK5, MPK7 and MPK14. Regulates ABA-induced hydrogen peroxide production and antioxidant defense. Required for tolerance to water stress and oxidative stress. {ECO:0000269|PubMed:25071223}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR07G17940.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) and hydrogen peroxide. {ECO:0000269|PubMed:25071223}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004958186.21e-53zinc finger protein 1
SwissprotQ75KE52e-30ZFP36_ORYSJ; Zinc finger protein 36
TrEMBLA0A0D9X1111e-135A0A0D9X111_9ORYZ; Uncharacterized protein
STRINGLPERR07G17940.11e-136(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP148981718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67450.11e-24zinc-finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]
  3. Zhang H, et al.
    A novel rice C2H2-type zinc finger protein, ZFP36, is a key player involved in abscisic acid-induced antioxidant defence and oxidative stress tolerance in rice.
    J. Exp. Bot., 2014. 65(20): p. 5795-809
    [PMID:25071223]
  4. Li W, et al.
    A Natural Allele of a Transcription Factor in Rice Confers Broad-Spectrum Blast Resistance.
    Cell, 2017. 170(1): p. 114-126.e15
    [PMID:28666113]