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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LPERR07G17840.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family |
bHLH |
Protein Properties |
Length: 284aa MW: 31245.9 Da PI: 5.3588 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LPERR07G17840.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 32.4 | 1.6e-10 | 201 | 241 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
r+RR+riN+++ L+ l+P+ +K++ +++Le+Av+Y+k Lq
LPERR07G17840.1 201 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 241
9******************97.....8******************9 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 284 aa
Download sequence Send
to blast |
MAQFLGAHGD HCFAYEQVDE SMEAMAAMIL PSLDTDSNSS SSCLNYDMPP QCWPQHGHSS 60 SVTSFPDPVN SYESFEYPVM DPFPLTDFDA HCAIPYLADD LSPLHGNHPS ERVEEEAKVA 120 PMATKRKSNA AMTASKKSKK AGKKDSIGSD EGGNAYIDTQ SSSSCTSEEG NMEGNAKSSL 180 KKTGTRANRG AATDPQSLYA RKRRERINER LRILQNLVPN GTKVDISTML EEAVQYVKFL 240 QLQIKLLSSD DMWMYAPIAY NGVNISNIDL NFSAKINITS HIQS
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP003985 | 1e-130 | AP003985.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1047_C01. |
GenBank | AP005149 | 1e-130 | AP005149.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBb0005G07. |
GenBank | AP014963 | 1e-130 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. |
GenBank | CP012615 | 1e-130 | CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence. |