 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
LPERR07G16580.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
| Family |
C2H2 |
| Protein Properties |
Length: 289aa MW: 31728.7 Da PI: 8.3348 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| LPERR07G16580.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 18.8 | 4.3e-06 | 260 | 282 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS
zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23
+Cp+C+k F+++ +L+ H + H
LPERR07G16580.1 260 VCPKCSKAFRDPVLLVEHVERdH 282
7*****************99888 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SuperFamily | SSF118310 | 1.44E-13 | 6 | 51 | No hit | No description |
| PROSITE profile | PS51039 | 7.468 | 10 | 59 | IPR000058 | Zinc finger, AN1-type |
| Gene3D | G3DSA:4.10.1110.10 | 3.1E-10 | 11 | 53 | IPR000058 | Zinc finger, AN1-type |
| SMART | SM00154 | 1.1E-4 | 13 | 52 | IPR000058 | Zinc finger, AN1-type |
| Pfam | PF01428 | 6.1E-14 | 13 | 51 | IPR000058 | Zinc finger, AN1-type |
| Gene3D | G3DSA:4.10.1110.10 | 1.5E-10 | 91 | 152 | IPR000058 | Zinc finger, AN1-type |
| SuperFamily | SSF118310 | 4.32E-9 | 93 | 145 | No hit | No description |
| PROSITE profile | PS51039 | 7.728 | 98 | 145 | IPR000058 | Zinc finger, AN1-type |
| SMART | SM00154 | 0.073 | 101 | 142 | IPR000058 | Zinc finger, AN1-type |
| Pfam | PF01428 | 3.5E-8 | 101 | 140 | IPR000058 | Zinc finger, AN1-type |
| SMART | SM00355 | 0.8 | 222 | 245 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE pattern | PS00028 | 0 | 224 | 245 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 8 | 259 | 282 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE profile | PS50157 | 8.767 | 259 | 287 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 261 | 282 | IPR007087 | Zinc finger, C2H2 |
| Sequence ? help Back to Top |
| Protein Sequence Length: 289 aa
Download sequence Send
to blast |
MGTPEFPNLG RHCSVGDCNQ IDFLPFTCDR CDHVFCLQHR SYTSHQCPNA SQKDVTVLIC 60
PLCAKGVRLN PNEDPNITWD THVNTDCDPS NYQKVTKKKK CPVPGCRETL TFSNTIRCKD 120
CTKEHCLKHR FGPDHKCPGP RKPESTFPFG NMLRKSQKAE PPSNNSSTGS SWWSSSLLTA 180
ASNFKSSAEA GMQKLSTATT QAIQKAKDGI STSSSSGGDL VEQCVQCPAR FSTVGALIEH 240
AEKSHQSNSQ PSRSRVTVDV CPKCSKAFRD PVLLVEHVER DHGGTSRVS
|
| Functional Description ? help
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| Source |
Description |
| UniProt | May be involved in environmental stress response. {ECO:0000250}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By cold, dehydration and salt stress. {ECO:0000269|PubMed:17033811}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | CT829129 | 0.0 | CT829129.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRN113H10, full insert sequence. |
| GenBank | HQ324818 | 0.0 | HQ324818.1 Oryza sativa Japonica Group clone KCS176H09 zinc finger AN1 and C2H2 domain-containing protein mRNA, complete cds. |
