PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR07G16580.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 289aa    MW: 31728.7 Da    PI: 8.3348
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR07G16580.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.84.3e-06260282223
                      EETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                      +Cp+C+k F+++ +L+ H  + H
  LPERR07G16580.1 260 VCPKCSKAFRDPVLLVEHVERdH 282
                      7*****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183101.44E-13651No hitNo description
PROSITE profilePS510397.4681059IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.103.1E-101153IPR000058Zinc finger, AN1-type
SMARTSM001541.1E-41352IPR000058Zinc finger, AN1-type
PfamPF014286.1E-141351IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.101.5E-1091152IPR000058Zinc finger, AN1-type
SuperFamilySSF1183104.32E-993145No hitNo description
PROSITE profilePS510397.72898145IPR000058Zinc finger, AN1-type
SMARTSM001540.073101142IPR000058Zinc finger, AN1-type
PfamPF014283.5E-8101140IPR000058Zinc finger, AN1-type
SMARTSM003550.8222245IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280224245IPR007087Zinc finger, C2H2
SMARTSM003558259282IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.767259287IPR007087Zinc finger, C2H2
PROSITE patternPS000280261282IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MGTPEFPNLG RHCSVGDCNQ IDFLPFTCDR CDHVFCLQHR SYTSHQCPNA SQKDVTVLIC  60
PLCAKGVRLN PNEDPNITWD THVNTDCDPS NYQKVTKKKK CPVPGCRETL TFSNTIRCKD  120
CTKEHCLKHR FGPDHKCPGP RKPESTFPFG NMLRKSQKAE PPSNNSSTGS SWWSSSLLTA  180
ASNFKSSAEA GMQKLSTATT QAIQKAKDGI STSSSSGGDL VEQCVQCPAR FSTVGALIEH  240
AEKSHQSNSQ PSRSRVTVDV CPKCSKAFRD PVLLVEHVER DHGGTSRVS
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR07G16580.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, dehydration and salt stress. {ECO:0000269|PubMed:17033811}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8291290.0CT829129.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRN113H10, full insert sequence.
GenBankHQ3248180.0HQ324818.1 Oryza sativa Japonica Group clone KCS176H09 zinc finger AN1 and C2H2 domain-containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006657863.10.0PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
SwissprotQ0D5B90.0SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
TrEMBLA0A0D9X0I90.0A0A0D9X0I9_9ORYZ; Uncharacterized protein
STRINGLPERR07G16580.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47633342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-115C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]