PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR07G16470.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C3H
Protein Properties Length: 671aa    MW: 71123.1 Da    PI: 6.8909
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR07G16470.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.83.7e-08278300426
                      ---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                      ++C++f+r G C+ Gd+C F+Hg
  LPERR07G16470.1 278 VPCPNFRRPGGCPSGDSCEFSHG 300
                      79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.201.7E-1566148IPR020683Ankyrin repeat-containing domain
PfamPF127961.3E-866136IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.78E-1367147IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.22869139IPR020683Ankyrin repeat-containing domain
SMARTSM002482.76999IPR002110Ankyrin repeat
CDDcd002044.04E-1271147No hitNo description
PROSITE profilePS5008812.529104139IPR002110Ankyrin repeat
SMARTSM002480.0044104136IPR002110Ankyrin repeat
PROSITE profilePS5010313.995274302IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-4274301IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-5275303IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-6278300IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-6278301IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-4306339IPR000571Zinc finger, CCCH-type
SMARTSM0035621310333IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 671 aa     Download sequence    Send to blast
MGELADLVVV PPQQPPLAGG RRDMLAALLE FAAADDVDGM KAALAEGGEE AAELADGVGL  60
WYGRSKAYEP RTPLMVAATY GSAAVVALLL GLGCVDVNRR PGVDGATALH CAASGGSRNA  120
VAVVKLLLAA GADPATPDSA GRFAADVILA PPASPDALGD LEVLLGRRRA LAVATSVASG  180
SSSPPLSSSP DEGNRSPSSR SSSLSPITVD RGKKEYPVDP TLPDIKSSVY ASDEFRMFAF  240
KVRPCSRAYS HDWTECPFVH PGENARRRDP RKHPYTAVPC PNFRRPGGCP SGDSCEFSHG  300
VFESWLHPSQ YRTRLCKEGA ACARRICFFA HDEDELRHVP HNNGVGLLSP RASASIDMTA  360
AAALGLLPGS PTRHFAPPPV SPSAGSNGGA AAAHWLQGSR LRSSFNARDA AVDDLGMLLD  420
WESQYLGALC LPPSSRPQPR LSTGLSIRPT IASSSIEDMF ASDMSMSPRF PNDQGHSVYS  480
PAHKSALLNK LHQQKGLLSP VNTNRMYSPR ALDPSALAHS PFGGMSPRSP RTMEPTSPLS  540
ARLGATATQR EMFEQLASLN KHQLPSVGSP RNSTASWGAV GSPMGKVDWG VDSDELVRLR  600
RPAQPGLGEE ETDMSWGQSL VNHAELNGKR GEIGMAGASA LMNRPDLNNQ GDLLDQTVIG  660
AWLEQMHLDQ K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5elk_A4e-1124033314118RING finger protein unkempt homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR07G16470.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006657856.10.0PREDICTED: zinc finger CCCH domain-containing protein 50
RefseqXP_015695270.10.0PREDICTED: zinc finger CCCH domain-containing protein 50
SwissprotQ84SL20.0C3H50_ORYSJ; Zinc finger CCCH domain-containing protein 50
TrEMBLA0A0D9X0H70.0A0A0D9X0H7_9ORYZ; Uncharacterized protein
STRINGLPERR07G16470.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82337126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.11e-127CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]