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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR07G16110.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | B3 | ||||||||
Protein Properties | Length: 770aa MW: 85889.1 Da PI: 8.1261 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 59.5 | 6e-19 | 287 | 386 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k l+ sd+++ grlvlpkk+ae++ ++++e+ l+++d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ e+ LPERR07G16110.3 287 FEKMLSASDAGRIGRLVLPKKCAEAYfpAISQAEGLPLKVQDATGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRID-PEG 378 89**************************777788889***************9989999999***9.********************987.777 PP ..EEEEE- CS B3 91 elvvkvfr 98 +lv+++++ LPERR07G16110.3 379 KLVMGFRK 386 77777776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.7E-29 | 283 | 388 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.83E-19 | 284 | 386 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.91E-22 | 285 | 386 | No hit | No description |
SMART | SM01019 | 5.7E-21 | 287 | 387 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.251 | 287 | 388 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.2E-16 | 287 | 386 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 14.391 | 542 | 592 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 2.2E-11 | 547 | 589 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 770 aa Download sequence Send to blast |
MCARKSHNAM APNHIWSSSM HMAQNVADRK DNFVKTWRPP AGQFSSQWRQ NNMWSMSTMQ 60 SDLQQRLAYE FDRPSGSEKL LPGRTFIHAH EKKFDDMHDK PTTPAGMNHI IRDRYANGHT 120 QHSSLDPTYA YTLYHREGPN QSLHDHSHQH HGENDHLSAR KGVTPDPCSS VSTTFKLDSH 180 HPSILKDDSS ALPAGLPSNF SSANGPKDHI RIGPTQQQQQ MASSSLQKQF YSHSVIDNDF 240 QAQLRNGRPR MDAKARSQLL PRYWPRITDQ ELQHLSGDSN SVITPLFEKM LSASDAGRIG 300 RLVLPKKCAE AYFPAISQAE GLPLKVQDAT GKEWVFQFRF WPNNNSRMYV LEGVTPCIQS 360 MQLQAGDTVT FSRIDPEGKL VMGFRKATNL SAEQDQPTKP ANVVPPPPEA NSKVSAADSG 420 PSAAVPRPIK VNTEIKISSP VEQATASKID KGALAQKEGP GTSSSSPGPV KRKATSVGPK 480 IKRFRMDNEE SMELKITWEE AQELLRPPPK APSIVIVDGH EFEEYEEPPI LGRRTYFVTD 540 QSGENHQWAQ CEDCSKWRKL PVDALLPSKW TCADNKWDPE RSSCDSAQEI NTEELTEMIP 600 IKPDGLDTLA NLAILGEGES LPSQPTTRHP RHRPGCSCIV CIQPPSGKGP KHKQTCTCNV 660 CMTVRRRFRT LMMRREKRQQ SEKDVGASRR KEVGQSSEPV PQAGSDAPPT NTTSSPPKTD 720 TNSEGPDDMA VDNKRTSSPI KNQIDLNSQP EREDEHSPKS DATRLRDNPT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 3e-65 | 265 | 389 | 2 | 126 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR07G16110.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK241199 | 0.0 | AK241199.1 Oryza sativa Japonica Group cDNA, clone: J065121L05, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015647113.1 | 0.0 | B3 domain-containing protein Os07g0563300 isoform X2 | ||||
Swissprot | Q0D5G4 | 0.0 | Y7633_ORYSJ; B3 domain-containing protein Os07g0563300 | ||||
TrEMBL | A0A0D9X0C5 | 0.0 | A0A0D9X0C5_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR07G16110.2 | 0.0 | (Leersia perrieri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32010.1 | 1e-143 | HSI2-like 1 |