PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR07G16110.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family B3
Protein Properties Length: 720aa    MW: 80533.2 Da    PI: 8.3738
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR07G16110.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.65.4e-19222321198
                      EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                      f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  e+
  LPERR07G16110.1 222 FEKMLSASDAGRIGRLVLPKKCAEAYfpAISQAEGLPLKVQDATGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRID-PEG 313
                      89**************************777788889***************9989999999***9.********************987.777 PP

                      ..EEEEE- CS
               B3  91 elvvkvfr 98 
                      +lv+++++
  LPERR07G16110.1 314 KLVMGFRK 321
                      77777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-29218323IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.7E-19219321IPR015300DNA-binding pseudobarrel domain
CDDcd100173.37E-22220321No hitNo description
PfamPF023625.6E-16222321IPR003340B3 DNA binding domain
SMARTSM010195.7E-21222322IPR003340B3 DNA binding domain
PROSITE profilePS5086311.251222323IPR003340B3 DNA binding domain
PROSITE profilePS5105014.391477527IPR011124Zinc finger, CW-type
PfamPF074962.0E-11482524IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 720 aa     Download sequence    Send to blast
MCARKSHNAM APNHIWSSSM HMAQNVADRK DNFVKTWRPP AGQFSSQWRQ NNMWSMSTMQ  60
SDLQQRLAYE FDRPSGSEKL LPGRTFIHAH EKKFDDMHDK PTTPAGMNHI IRDRYANGHT  120
QHSSLDPTYA YTLYHREGPN QSLHDHSHQH HGENDHLSAR KGKQFYSHSV IDNDFQAQLR  180
NGRPRMDAKA RSQLLPRYWP RITDQELQHL SGDSNSVITP LFEKMLSASD AGRIGRLVLP  240
KKCAEAYFPA ISQAEGLPLK VQDATGKEWV FQFRFWPNNN SRMYVLEGVT PCIQSMQLQA  300
GDTVTFSRID PEGKLVMGFR KATNLSAEQD QPTKPANVVP PPPEANSKVS AADSGPSAAV  360
PRPIKVNTEI KISSPVEQAT ASKIDKGALA QKEGPGTSSS SPGPVKRKAT SVGPKIKRFR  420
MDNEESMELK ITWEEAQELL RPPPKAPSIV IVDGHEFEEY EEPPILGRRT YFVTDQSGEN  480
HQWAQCEDCS KWRKLPVDAL LPSKWTCADN KWDPERSSCD SAQEINTEEL TEMIPIKPGA  540
AKKSKGTDNI DVSDGLDTLA NLAILGEGES LPSQPTTRHP RHRPGCSCIV CIQPPSGKGP  600
KHKQTCTCNV CMTVRRRFRT LMMRREKRQQ SEKDVGASRR KEVGQSSEPV PQAGSDAPPT  660
NTTSSPPKTD TNSEGPDDMA VDNKRTSSPI KNQIDLNSQP EREDEHSPKS DATRLRDNPT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C2e-652003241125B3 domain-containing transcription repressor VAL1
5yzz_C2e-652003241125B3 domain-containing transcription repressor VAL1
5z00_C2e-652003241125B3 domain-containing transcription repressor VAL1
5z00_G2e-652003241125B3 domain-containing transcription repressor VAL1
5z00_K2e-652003241125B3 domain-containing transcription repressor VAL1
5z00_M2e-652003241125B3 domain-containing transcription repressor VAL1
6j9a_A2e-652003242126B3 domain-containing transcription repressor VAL1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR07G16110.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2411990.0AK241199.1 Oryza sativa Japonica Group cDNA, clone: J065121L05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647112.10.0B3 domain-containing protein Os07g0563300 isoform X1
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A0D9X0C30.0A0A0D9X0C3_9ORYZ; Uncharacterized protein
STRINGLPERR07G16110.20.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-145HSI2-like 1