PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR07G15500.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 712aa    MW: 78945.2 Da    PI: 5.4715
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR07G15500.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.31.8e-0566105555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      + ++ErrRR+r+N  ++ Lr ++ k            ++L  A+e+Ik+Lq
  LPERR07G15500.1  66 NLAAERRRRSRLNGNIFALRAVMSKE-----------ATLSDAIEHIKNLQ 105
                      5689*****************99886...........6***********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.32E-860108No hitNo description
SuperFamilySSF474595.1E-1060123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-663114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-567110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:1.25.10.107.2E-26295380IPR011989Armadillo-like helical
PfamPF032249.0E-22296379No hitNo description
SuperFamilySSF483712.48E-113300702IPR016024Armadillo-type fold
Gene3DG3DSA:1.25.10.102.7E-57410591IPR011989Armadillo-like helical
PfamPF032242.7E-50413583No hitNo description
PfamPF116984.0E-38589701IPR011987ATPase, V1 complex, subunit H, C-terminal
Gene3DG3DSA:1.25.40.1507.4E-39603702IPR011987ATPase, V1 complex, subunit H, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0015991Biological ProcessATP hydrolysis coupled proton transport
GO:0000221Cellular Componentvacuolar proton-transporting V-type ATPase, V1 domain
GO:0000325Cellular Componentplant-type vacuole
GO:0005794Cellular ComponentGolgi apparatus
GO:0005886Cellular Componentplasma membrane
GO:0009507Cellular Componentchloroplast
GO:0016820Molecular Functionhydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 712 aa     Download sequence    Send to blast
MPRRARARGG GGSGEEVKLE DDFVDSVLNF AGGGGGGEGE EEGDDGEEDQ QQQQPAAAGK  60
EFKSKNLAAE RRRRSRLNGN IFALRAVMSK EATLSDAIEH IKNLQNEVLE LQRQLGDSPG  120
EAWEKQGSAS CSESFVPPEN THYQGQVELI SLGSCKYNLK IFWTKRAGLF TKVLEALCSY  180
KVQVLSLNTI SFYGYAESFF TVEVKDVFST SLLELIPGEV VSNTHDAGEP TPQSLAPLAS  240
CSVESLAPDR CGFFVGDFTG FDRIQRWGRF DLIRGVNLSA LAGGLAAVLG LAAMDHAELT  300
TDQVLKRDIP WESYMANKLI SGTCLQLLRR YDHKPESQRG PLLDEDGPSY VRVFLNILRN  360
ISKEETVEYV LALIDEMLAG GNLVAGDMIA LESARPKIQN GIVPNGEASN SKSKLTSTQD  420
VLRGLVDWLC SQLRNPAHPN CSIPTAMHCL ATLLREQYVR ALFVQLDGVK LLIPLISPAS  480
TQQSIQLLYE TCLCIWLLSF YDAAVDYLST TRVMPRLVDV VKGSTKEKVV RVVIMSIRNL  540
LAKGAFAAQM IDLGLPHIVQ NLKAQAWTDE DLLDALNQLE VGLKDNLKKL SSFEKYKQQV  600
LLGHLDWSPM HKDPSFWREN INNFEENDFQ ILRVLMTIID TSTDTTALAV ACYDLSQFLQ  660
YHPSGRIVVA DLKAKDRVMK LMNHENAEVR KNALLCVQRL FLGAKYASFL QT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ho8_A4e-18475701232475VACUOLAR ATP SYNTHASE SUBUNIT H
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSubunit of the peripheral V1 complex of vacuolar ATPase. Subunit H activates the ATPase activity of the enzyme and couples ATPase activity to proton flow. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR07G15500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0677140.0AK067714.1 Oryza sativa Japonica Group cDNA clone:J013120K21, full insert sequence.
GenBankAK1043310.0AK104331.1 Oryza sativa Japonica Group cDNA clone:001-032-D11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647646.10.0probable V-type proton ATPase subunit H
SwissprotQ84ZC00.0VATH_ORYSJ; Probable V-type proton ATPase subunit H
TrEMBLA0A0D9X0470.0A0A0D9X047_9ORYZ; Uncharacterized protein
STRINGLPERR07G15500.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP491455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.11e-14bHLH family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]