PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR07G12350.2
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family CAMTA
Protein Properties Length: 865aa    MW: 96321.6 Da    PI: 8.1597
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR07G12350.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-199.72.2e-3132106477
             CG-1   4 e.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvgg 77 
                      e   rw +++ei+aiL+n++++++++++ ++p sg+++Ly+rk+vr+frkDG+swkkkkdg+tv+E+hekLK ++
  LPERR07G12350.2  32 EaAVRWFRPNEIYAILANHARFKIHAQPVDKPVSGTVVLYDRKVVRNFRKDGHSWKKKKDGRTVQEAHEKLKENA 106
                      4488********************************************************************765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143741.18726154IPR005559CG-1 DNA-binding domain
SMARTSM010761.3E-2529219IPR005559CG-1 DNA-binding domain
PfamPF038594.4E-2533105IPR005559CG-1 DNA-binding domain
SuperFamilySSF812964.01E-11329415IPR014756Immunoglobulin E-set
SuperFamilySSF484032.18E-13505615IPR020683Ankyrin repeat-containing domain
CDDcd002041.33E-11513609No hitNo description
Gene3DG3DSA:1.25.40.207.5E-14528615IPR020683Ankyrin repeat-containing domain
PfamPF127969.6E-7538613IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029714.902541621IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.781550582IPR002110Ankyrin repeat
SMARTSM002486.4E-6550579IPR002110Ankyrin repeat
SMARTSM00248580589618IPR002110Ankyrin repeat
SuperFamilySSF525405.58E-9666767IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.83716738IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.657717743IPR000048IQ motif, EF-hand binding site
PfamPF006120.0026719737IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0095739761IPR000048IQ motif, EF-hand binding site
PROSITE profilePS5009610.493740764IPR000048IQ motif, EF-hand binding site
PfamPF006120.0047741761IPR000048IQ motif, EF-hand binding site
SMARTSM000152.4822844IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.084824852IPR000048IQ motif, EF-hand binding site
PfamPF006120.04825844IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 865 aa     Download sequence    Send to blast
MAGAGGWDAL IGSEIHGFLT YADLNYEKLV AEAAVRWFRP NEIYAILANH ARFKIHAQPV  60
DKPVSGTVVL YDRKVVRNFR KDGHSWKKKK DGRTVQEAHE KLKENAMAAP NSEPEAADLP  120
TVNLVHTSPL TSADSTSAHT EQSYSTAVPE EINSHGGISA SSETSNHDSS LEEFWANLLE  180
SSIKNDPKSD TSICGGSFSS SQQINNGPKN SENIIFNTSM SSNAIPALYM ASETYPTNHG  240
LNQVTADHFK ALKNQGDQTH SLFTSNVDFQ SDQFISSLVK SSMDGKVSDP NDVPARQNSL  300
GLWKYLDDDN PGLEDNPGSV TQTNKTLFKI TEISPECAYS TETTKVVVVG NFDEQYKHLT  360
GSAMYVVFGD QCMAADIVQT GVYRFMVGPH TPGQVDFYLT IDGKTPISEI RSFTYHVMHA  420
NSLGGRFTPS EDEYKKSNLQ MQMRLARLLF ATNKKKIAPK LLVEGSKVSN LISASPEKEW  480
TNLWNILSNS EGSEGVTESL LELVLRNRLQ EWLVEMVMEG HKSTGRDDLG QGAIHLCSFL  540
GFSLDFRDSS GWTALHWAAY HGRERMVAAL LSAGANPSLV TDPTPEFPAG LTAADLAARQ  600
GYDGLAAYLA EKGLTAHFEA MSLSKDTTQS PSKMKLTKLQ SEKFENLSEQ ELCLKESLAA  660
YRNAADAACN IQAALRERTL KLQTKAIQLA NPEIEASEIV AAMRIQHAFR NYNRKKTMRA  720
AARIQSHFRT WKMRRNFINM RRQAIRIQAA YRGHQVRRQY RKVIWSVGIV EKAILRWRKK  780
RKGLRGIASG MPVVMTVDAE AELASTAEED FFQAGRQQAE DRFNRSVVRV QALFRSYKAQ  840
QEYRRMKIAH EEAKLEFSEG QLGAA
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds calmodulin in a calcium-dependent manner in vitro. Binds to the DNA consensus sequence 5'-T[AC]CG[CT]GT[GT][GT][GT][GT]T[GT]CG-3'. {ECO:0000269|PubMed:16192280}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00435DAPTransfer from AT4G16150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR07G12350.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0654800.0AK065480.1 Oryza sativa Japonica Group cDNA clone:J013025F20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646432.10.0calmodulin-binding transcription activator CBT-like isoform X2
SwissprotQ7XHR20.0CBT_ORYSJ; Calmodulin-binding transcription activator CBT
TrEMBLA0A0D9WYY70.0A0A0D9WYY7_9ORYZ; Uncharacterized protein
STRINGLPERR07G12350.20.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98312933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16150.10.0calmodulin binding;transcription regulators