PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR07G11260.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family WRKY
Protein Properties Length: 293aa    MW: 32182.1 Da    PI: 5.2342
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR07G11260.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY84.97.6e-27116174259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      dD y WrKYGqKe+ g++f+rsYYrC+++ gC+++k+v++s++dp+ +eitY geH+++
  LPERR07G11260.1 116 DDSYPWRKYGQKEILGARFARSYYRCAQTsGCTARKHVQKSDDDPSRLEITYIGEHTCD 174
                      8**************************999***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.1E-26110174IPR003657WRKY domain
SuperFamilySSF1182901.57E-23111174IPR003657WRKY domain
SMARTSM007741.7E-33115175IPR003657WRKY domain
PfamPF031064.5E-25116174IPR003657WRKY domain
PROSITE profilePS5081121.884116176IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MAGGDGGTAA TEKLIRSAQK STNQLKALLS VAEGGRVVEA ILSDISDSLS QALASLQLGK  60
SSSSDDRRLP APTSLSAYGQ SVENGGGRPV SRRRCQRRSR ADGLSRRLLI QQGDRDDSYP  120
WRKYGQKEIL GARFARSYYR CAQTSGCTAR KHVQKSDDDP SRLEITYIGE HTCDDDLPSP  180
AIISPFSCHH RLPPAAVDVP PSTLQKLEEH LQAASDLMMP CTRSMETMEE MVASWLFIPS  240
PACSQSELLP ELEAEFHYQL QPDASLADPV EYKKGHGEEE FLPTDDFVVP DLM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-161141721575Disease resistance protein RRS1
5w3x_D2e-161141721575Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR07G11260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0052566e-38AP005256.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0038F09.
GenBankAP0149636e-38AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126156e-38CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645533.16e-69uncharacterized protein LOC107278742 isoform X2
TrEMBLA0A0D9WYJ90.0A0A0D9WYJ9_9ORYZ; Uncharacterized protein
STRINGLPERR07G11260.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141862125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.11e-22WRKY family protein