PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR07G06910.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | AP2 | ||||||||
Protein Properties | Length: 383aa MW: 41411.9 Da PI: 6.9504 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 22.7 | 2.5e-07 | 121 | 142 | 1 | 22 |
AP2 1 sgykGVrwdkkrgrWvAeIrdp 22 s+y+GV++++++grW+++I+ + LPERR07G06910.1 121 SQYRGVTFYRRTGRWESHIWAY 142 78*****************984 PP | |||||||
2 | AP2 | 42.7 | 1.4e-13 | 194 | 244 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ g +k+++lg f+++ eAa+a+++a+ +++g LPERR07G06910.1 194 SKYRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDSEIEAARAYDRAAIRFNG 244 89********.7******...5...334336**********99**********99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.5E-5 | 121 | 160 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 9.5E-7 | 122 | 165 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.3E-9 | 194 | 244 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.43E-17 | 194 | 253 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 7.79E-26 | 194 | 254 | No hit | No description |
PROSITE profile | PS51032 | 16.107 | 195 | 252 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.6E-16 | 195 | 252 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.2E-33 | 195 | 258 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-6 | 196 | 207 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-6 | 234 | 254 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 383 aa Download sequence Send to blast |
MVLDLNVESP ATSSSSTPPE GGGGGGGGGF RFDLLGGSPD EDGCSPPVMT RQLFPSPYAA 60 VVAAAAAVGD GSPPRHTPAA GGEGSWQRRA ADLGVAQGQR SPAGAAGGGK KSRRGPRSRS 120 SQYRGVTFYR RTGRWESHIW AYDRAAIKFR GLDADINFNL NDYEDDLKQM RNWTKEEFVH 180 ILRRQSTGFA RGSSKYRGVT LHKCGRWEAR MGQLLGKKYI YLGLFDSEIE AARAYDRAAI 240 RFNGREAVTN FDPSSYDGDV LPETDNDAVV DGDIIDLNLR ISQPNVHDLK SDGTLTGFQL 300 NCDSPEASSS VVTQEVPMEK RPELVPQSFP TWSWQIQGSP LPLLPTAASS GFSTGTVADA 360 ACVPSSRPHP FQGHHQFYFP PTA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (PubMed:17144896). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:17144896, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR07G06910.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:20017947, ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK111874 | 0.0 | AK111874.1 Oryza sativa Japonica Group cDNA clone:J033046C12, full insert sequence. | |||
GenBank | CT831975 | 0.0 | CT831975.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA106E13, full insert sequence. | |||
GenBank | DQ374663 | 0.0 | DQ374663.1 Oryza sativa (japonica cultivar-group) supernumerary bract mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015647892.1 | 0.0 | AP2-like ethylene-responsive transcription factor TOE3 isoform X2 | ||||
Swissprot | Q8H443 | 0.0 | AP23_ORYSJ; APETALA2-like protein 3 | ||||
TrEMBL | A0A0D9WX16 | 0.0 | A0A0D9WX16_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR07G06910.2 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2448 | 38 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.3 | 3e-78 | related to AP2.7 |
Publications ? help Back to Top | |||
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