PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR07G06180.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 664aa    MW: 72495.4 Da    PI: 6.5472
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR07G06180.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.33.1e-14463509455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h + ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  LPERR07G06180.1 463 NHVMKERRRREKLNEKFIILRSLVPFM-----TKMDKASILGDTIEYVKQLR 509
                      799***********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.3E-455194IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.079459508IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.7E-18463521IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.65E-15463513No hitNo description
PfamPF000108.3E-12463508IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-18463530IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-15465514IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0010214Biological Processseed coat development
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 664 aa     Download sequence    Send to blast
MAAGEALQAV AKSLRWTYSL LWHICPHQGG ALVWAEGHYN GAVKTRKTTV MPSPEEDGGG  60
GGEHAAARHR SRQLRELYDW LAAAGETTAT ASGGGGRRPS AALSPEDLTE TEWFFLMSAS  120
YCFPSGVGLP GRAFAMRGHV WLTGANEVDS KVFLRAILAK TVVCIPVVDG VLEIGTTEKV  180
KEDIGLIQYA RSIFMDQHGI HMMPTLSEHS TSNPVTHIHQ HPIQMQIQTG INQTKMDSDE  240
LNPKEENDET EEEGMSFSDT NIDTARNSGQ LQDPLNMVSN DQTMPNHAVS SDLMQCEMSE  300
VLRDGLDEEI QMLMDYQNSN GQLSLQGPDE PCHSWHVLCE ELQNDYHPAA EDQVTSPENS  360
HYPKTLFKIL QYNAHRQQEL NIMNYLPVSE QSSFSRWSPK GTDDNHQVMI SQGTTQRMLK  420
CILMIVPSSH CSYREDQTPE SRGGKGASGS RKVGAVQGDF SGNHVMKERR RREKLNEKFI  480
ILRSLVPFMT KMDKASILGD TIEYVKQLRK RIQDLESSSS SSRPRNPSSS TPASSGKKRR  540
TTRATTSAAA TAATEAGSSS NGVAGETIAA AEAVVQVSII ESDALVELRC SGGGDGDGGV  600
LLRVMKALQG LHLDVTAVQA STSPDGVLLA DLRAKVKKVR GRRSSSIAQV KRTIHLVLSS  660
SPST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A3e-16719413192Transcription factor MYC3
4rqw_B3e-16719413192Transcription factor MYC3
4rs9_A3e-16719413192Transcription factor MYC3
4yz6_A3e-16719413192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1467472ERRRRE
2468473RRRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR07G06180.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2475030.0AB247503.1 Oryza sativa Indica Group Rc mRNA for Myc-like proanthocyanidin regulatory protein, complete cds, cultivar: Kasalath.
GenBankJF3030610.0JF303061.1 Oryza sativa Indica Group SD7-1D bHLH transcription factor (SD7-1/Rc) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646360.20.0LOW QUALITY PROTEIN: basic helix-loop-helix protein A-like
TrEMBLA0A0D9WWT10.0A0A0D9WWT1_9ORYZ; Uncharacterized protein
STRINGLPERR07G06180.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88633036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.18e-60bHLH family protein