PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR07G06180.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | bHLH | ||||||||
Protein Properties | Length: 664aa MW: 72495.4 Da PI: 6.5472 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 44.3 | 3.1e-14 | 463 | 509 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h + ErrRR+++N++f Lr+l+P +K++Ka+iL ++eY+k+L+ LPERR07G06180.1 463 NHVMKERRRREKLNEKFIILRSLVPFM-----TKMDKASILGDTIEYVKQLR 509 799***********************8.....8*****************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 1.3E-45 | 5 | 194 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 17.079 | 459 | 508 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.7E-18 | 463 | 521 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.65E-15 | 463 | 513 | No hit | No description |
Pfam | PF00010 | 8.3E-12 | 463 | 508 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.7E-18 | 463 | 530 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-15 | 465 | 514 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010026 | Biological Process | trichome differentiation | ||||
GO:0010214 | Biological Process | seed coat development | ||||
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 664 aa Download sequence Send to blast |
MAAGEALQAV AKSLRWTYSL LWHICPHQGG ALVWAEGHYN GAVKTRKTTV MPSPEEDGGG 60 GGEHAAARHR SRQLRELYDW LAAAGETTAT ASGGGGRRPS AALSPEDLTE TEWFFLMSAS 120 YCFPSGVGLP GRAFAMRGHV WLTGANEVDS KVFLRAILAK TVVCIPVVDG VLEIGTTEKV 180 KEDIGLIQYA RSIFMDQHGI HMMPTLSEHS TSNPVTHIHQ HPIQMQIQTG INQTKMDSDE 240 LNPKEENDET EEEGMSFSDT NIDTARNSGQ LQDPLNMVSN DQTMPNHAVS SDLMQCEMSE 300 VLRDGLDEEI QMLMDYQNSN GQLSLQGPDE PCHSWHVLCE ELQNDYHPAA EDQVTSPENS 360 HYPKTLFKIL QYNAHRQQEL NIMNYLPVSE QSSFSRWSPK GTDDNHQVMI SQGTTQRMLK 420 CILMIVPSSH CSYREDQTPE SRGGKGASGS RKVGAVQGDF SGNHVMKERR RREKLNEKFI 480 ILRSLVPFMT KMDKASILGD TIEYVKQLRK RIQDLESSSS SSRPRNPSSS TPASSGKKRR 540 TTRATTSAAA TAATEAGSSS NGVAGETIAA AEAVVQVSII ESDALVELRC SGGGDGDGGV 600 LLRVMKALQG LHLDVTAVQA STSPDGVLLA DLRAKVKKVR GRRSSSIAQV KRTIHLVLSS 660 SPST |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 3e-16 | 7 | 194 | 13 | 192 | Transcription factor MYC3 |
4rqw_B | 3e-16 | 7 | 194 | 13 | 192 | Transcription factor MYC3 |
4rs9_A | 3e-16 | 7 | 194 | 13 | 192 | Transcription factor MYC3 |
4yz6_A | 3e-16 | 7 | 194 | 13 | 192 | Transcription factor MYC3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 467 | 472 | ERRRRE |
2 | 468 | 473 | RRRREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR07G06180.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB247503 | 0.0 | AB247503.1 Oryza sativa Indica Group Rc mRNA for Myc-like proanthocyanidin regulatory protein, complete cds, cultivar: Kasalath. | |||
GenBank | JF303061 | 0.0 | JF303061.1 Oryza sativa Indica Group SD7-1D bHLH transcription factor (SD7-1/Rc) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015646360.2 | 0.0 | LOW QUALITY PROTEIN: basic helix-loop-helix protein A-like | ||||
TrEMBL | A0A0D9WWT1 | 0.0 | A0A0D9WWT1_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR07G06180.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8863 | 30 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09820.1 | 8e-60 | bHLH family protein |