PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR07G05890.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 289aa    MW: 31572.3 Da    PI: 8.404
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR07G05890.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.39.3e-193686155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     s++ GVr+++ +grWvAeI+d +   ++ r +lg+f taeeAa+a+++a+  l+g
  LPERR07G05890.1 36 SKFVGVRQRP-SGRWVAEIKDTT---QKIRMWLGTFETAEEAARAYDEAACLLRG 86
                     79********.7*********32...35**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.70E-333696No hitNo description
SuperFamilySSF541711.37E-193695IPR016177DNA-binding domain
PfamPF008472.9E-133686IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-283795IPR001471AP2/ERF domain
PROSITE profilePS5103219.8753794IPR001471AP2/ERF domain
SMARTSM003804.1E-3737100IPR001471AP2/ERF domain
PRINTSPR003671.0E-73849IPR001471AP2/ERF domain
PRINTSPR003671.0E-76076IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0035865Biological Processcellular response to potassium ion
GO:0048528Biological Processpost-embryonic root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MELQFQKPQG HAQQQCHYKV PTTAAAKNKG RSKCSSKFVG VRQRPSGRWV AEIKDTTQKI  60
RMWLGTFETA EEAARAYDEA ACLLRGSNTR TNFATHAAPD SPLASRIRTL LTHKKLKKST  120
PQPTITFSTA VYHHTSTIPT TAVTSTSTVT TTTSGVSPSR SNSPSINFAM SSSVLHSTNL  180
SSQHMRDEVH KGYLNGGSEE LQLASQHYDQ SWALNTSLLL GDGCDMTGSN ACSMVSDQDK  240
MKTEKQGSPS SHGMNGAQEQ ESFDMGNDPC DSLWDLPPIC QLSCKSLMY
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00521DAPTransfer from AT5G19790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR07G05890.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0042731e-130AP004273.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0431A02.
GenBankAP0149631e-130AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126151e-130CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645889.11e-139ethylene-responsive transcription factor ERN1
TrEMBLA0A0D9WWP30.0A0A0D9WWP3_9ORYZ; Uncharacterized protein
STRINGLPERR07G05890.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39003273
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-28related to AP2 11