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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR07G05890.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | ERF | ||||||||
Protein Properties | Length: 289aa MW: 31572.3 Da PI: 8.404 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.3 | 9.3e-19 | 36 | 86 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s++ GVr+++ +grWvAeI+d + ++ r +lg+f taeeAa+a+++a+ l+g LPERR07G05890.1 36 SKFVGVRQRP-SGRWVAEIKDTT---QKIRMWLGTFETAEEAARAYDEAACLLRG 86 79********.7*********32...35**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.70E-33 | 36 | 96 | No hit | No description |
SuperFamily | SSF54171 | 1.37E-19 | 36 | 95 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.9E-13 | 36 | 86 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.7E-28 | 37 | 95 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.875 | 37 | 94 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.1E-37 | 37 | 100 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-7 | 38 | 49 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-7 | 60 | 76 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000302 | Biological Process | response to reactive oxygen species | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0035865 | Biological Process | cellular response to potassium ion | ||||
GO:0048528 | Biological Process | post-embryonic root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MELQFQKPQG HAQQQCHYKV PTTAAAKNKG RSKCSSKFVG VRQRPSGRWV AEIKDTTQKI 60 RMWLGTFETA EEAARAYDEA ACLLRGSNTR TNFATHAAPD SPLASRIRTL LTHKKLKKST 120 PQPTITFSTA VYHHTSTIPT TAVTSTSTVT TTTSGVSPSR SNSPSINFAM SSSVLHSTNL 180 SSQHMRDEVH KGYLNGGSEE LQLASQHYDQ SWALNTSLLL GDGCDMTGSN ACSMVSDQDK 240 MKTEKQGSPS SHGMNGAQEQ ESFDMGNDPC DSLWDLPPIC QLSCKSLMY |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00521 | DAP | Transfer from AT5G19790 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR07G05890.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004273 | 1e-130 | AP004273.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0431A02. | |||
GenBank | AP014963 | 1e-130 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012615 | 1e-130 | CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015645889.1 | 1e-139 | ethylene-responsive transcription factor ERN1 | ||||
TrEMBL | A0A0D9WWP3 | 0.0 | A0A0D9WWP3_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR07G05890.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3900 | 32 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 1e-28 | related to AP2 11 |