PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR07G04400.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family HSF
Protein Properties Length: 362aa    MW: 40982.6 Da    PI: 4.55
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR07G04400.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.23.5e-35421332102
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+ye+++d+ ++ ++sws+++nsfvv+d++ fa+ +Lp++Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+++ll+
  LPERR07G04400.1  42 FLTKTYEMVDDAGTDGVVSWSATNNSFVVWDPHAFATVLLPRFFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQRHLLK 126
                      9********************999*****************************************999.........***************** PP

                      XXXXXXX CS
     HSF_DNA-bind  96 kikrkks 102
                      +ikr+k 
  LPERR07G04400.1 127 NIKRRKP 133
                      ****985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.3E-6338131IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.31E-3638131IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.107.6E-3938131IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.4E-194265IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.7E-3142131IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.4E-198092IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434081105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.4E-1993105IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MEPMLNAVKE EEEGSHGDGR AQAAAAAPRP MEGLHEAGPP PFLTKTYEMV DDAGTDGVVS  60
WSATNNSFVV WDPHAFATVL LPRFFKHNNF SSFVRQLNTY GFRKVDPDRW EFANEGFLRG  120
QRHLLKNIKR RKPPSHTASN QQSLGPYLEV GHFGYDAEID RLKRDKQLLM AEVVKLRQEQ  180
QNTKEHLKAM EDRLQATEQR QQQMMAFLAR VMKNPEFLKQ LMAQNEMRKE LQDAISKKRR  240
RHIDQGPEVD DVGTSSSIEQ ESPVLFDPQE SVEFLVDGIP SDLENSAMDA GGLVEPQDFD  300
VGASEQQQIG PQPQGEWNDN FWEELLNEGL GGEENDNPVV IEDDMNVLSE KMGYLNSNSP  360
NS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-26141311129Heat shock factor protein 1
5d5v_B3e-26141311129Heat shock factor protein 1
5d5v_D3e-26141311129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124130LKNIKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR07G04400.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3444870.0AY344487.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF5 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645272.10.0heat stress transcription factor A-2b
SwissprotQ6VBB20.0HFA2B_ORYSJ; Heat stress transcription factor A-2b
TrEMBLA0A0D9WW520.0A0A0D9WW52_9ORYZ; Uncharacterized protein
STRINGLPERR07G04400.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-107heat shock transcription factor A6B
Publications ? help Back to Top
  1. Rezaei MK,Shobbar ZS,Shahbazi M,Abedini R,Zare S
    Glutathione S-transferase (GST) family in barley: identification of members, enzyme activity, and gene expression pattern.
    J. Plant Physiol., 2013. 170(14): p. 1277-84
    [PMID:23664583]