 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
LPERR07G03250.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
| Family |
YABBY |
| Protein Properties |
Length: 133aa MW: 14933.9 Da PI: 8.6141 |
| Description |
YABBY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| LPERR07G03250.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | YABBY | 91.8 | 1.7e-28 | 2 | 63 | 2 | 63 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshl 63
+ +++se+vCyv+Cn+Cntil+v+vP+++++++vtvrCGhCt++ls++la ++q++++++h
LPERR07G03250.1 2 SAQFTSEHVCYVNCNYCNTILVVNVPNNCSYNIVTVRCGHCTMVLSMDLAPFHQARTVQDHQ 63
6789*******************************************************993 PP
|
| 2 | YABBY | 118.4 | 1.2e-36 | 69 | 123 | 116 | 170 |
YABBY 116 irPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
+ PekrqrvPsaynrfikeeiqrik+snP+ishreafsaaaknWah+P++hfgl
LPERR07G03250.1 69 FQAPEKRQRVPSAYNRFIKEEIQRIKTSNPEISHREAFSAAAKNWAHLPRLHFGL 123
568**************************************************97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 133 aa
Download sequence Send
to blast |
MSAQFTSEHV CYVNCNYCNT ILVVNVPNNC SYNIVTVRCG HCTMVLSMDL APFHQARTVQ 60
DHQVQNRGFQ APEKRQRVPS AYNRFIKEEI QRIKTSNPEI SHREAFSAAA KNWAHLPRLH 120
FGLSVADGGG GSN
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | May play a role in floral meristem development and maintenance of stamens, rather than in determining polarity in floral organs. {ECO:0000269|PubMed:15604733, ECO:0000269|PubMed:17369428}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AB274013 | 6e-95 | AB274013.1 Oryza sativa Japonica Group OsYABBY1 mRNA for OsYABBY1 protein, complete cds. |
| GenBank | AF098752 | 6e-95 | AF098752.1 Oryza sativa clone FIL1 unknown mRNA. |
| GenBank | AK070045 | 6e-95 | AK070045.1 Oryza sativa Japonica Group cDNA clone:J023038F18, full insert sequence. |
| GenBank | CT828681 | 6e-95 | CT828681.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA230C13, full insert sequence. |
| GenBank | CT828682 | 6e-95 | CT828682.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA240F12, full insert sequence. |
| GenBank | CT828683 | 6e-95 | CT828683.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA249C03, full insert sequence. |
| GenBank | CT828684 | 6e-95 | CT828684.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN084I04, full insert sequence. |
| GenBank | CT832577 | 6e-95 | CT832577.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA333Z37, full insert sequence. |
| GenBank | FJ750932 | 6e-95 | FJ750932.1 Oryza sativa clone KCS005G02 MADS-box transcription factor mRNA, complete cds. |
| Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
Science, 2003. 301(5631): p. 376-9
[PMID:12869764] - Ohmori Y,Abiko M,Horibata A,Hirano HY
A transposon, Ping, is integrated into intron 4 of the DROOPING LEAF gene of rice, weakly reducing its expression and causing a mild drooping leaf phenotype.
Plant Cell Physiol., 2008. 49(8): p. 1176-84
[PMID:18593744] - Ohmori Y,Toriba T,Nakamura H,Ichikawa H,Hirano HY
Temporal and spatial regulation of DROOPING LEAF gene expression that promotes midrib formation in rice.
Plant J., 2011. 65(1): p. 77-86
[PMID:21175891] - Li H, et al.
Rice MADS6 interacts with the floral homeotic genes SUPERWOMAN1, MADS3, MADS58, MADS13, and DROOPING LEAF in specifying floral organ identities and meristem fate.
Plant Cell, 2011. 23(7): p. 2536-52
[PMID:21784949] - Tanaka W, et al.
The YABBY gene TONGARI-BOUSHI1 is involved in lateral organ development and maintenance of meristem organization in the rice spikelet.
Plant Cell, 2012. 24(1): p. 80-95
[PMID:22286138] - Yang C,Ma Y,Li J
The rice YABBY4 gene regulates plant growth and development through modulating the gibberellin pathway.
J. Exp. Bot., 2016. 67(18): p. 5545-5556
[PMID:27578842]
|
