PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR07G02970.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 135aa    MW: 13684.4 Da    PI: 7.9704
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR07G02970.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.000481638123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C  C+k+F  +  L  H++ H
  LPERR07G02970.1 16 FPCLFCSKTFVKSQALGGHQNAH 38
                     89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.4E-4642IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.59E-61242No hitNo description
PROSITE profilePS5015710.6991643IPR007087Zinc finger, C2H2
PROSITE patternPS0002801838IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MESNSRRHAG GGARLFPCLF CSKTFVKSQA LGGHQNAHKK DRGGWNPYVY GGVAGEVPTG  60
PIGASCWPGG VVPDFSVTAT PPTPIIAGAS HGGAAPAAAA VARGYGSIGC WWMGSGGGVD  120
SEKDGGEMVD LELRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR07G02970.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004955478.12e-21zinc finger protein GIS
TrEMBLA0A0D9WVK88e-93A0A0D9WVK8_9ORYZ; Uncharacterized protein
STRINGLPERR07G02970.11e-93(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP384714
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14010.18e-11C2H2 family protein