PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR07G02950.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 156aa    MW: 15809.6 Da    PI: 7.5091
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR07G02950.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.000644466123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C  C+++F  +  L  H++ H
  LPERR07G02950.1 44 FECLFCDRTFVKSQALGGHQNAH 66
                     89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.35E-64171No hitNo description
Gene3DG3DSA:3.30.160.605.7E-44270IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.0744471IPR007087Zinc finger, C2H2
PROSITE patternPS0002804666IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MEPYSSSPPC RRPSAPVVDL SLSLNTAAPA TATAQVGGKE GRVFECLFCD RTFVKSQALG  60
GHQNAHRKER VAAAGVSNPY AAGTDIAGAS AGLWSSIPIA SHGVTTATDN NFRWSGGASV  120
GFDSSKKVAS SSSASSSTMG VVVAGGEEVV GLELHL
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR07G02950.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646457.12e-26zinc finger protein GIS3
TrEMBLA0A0D9WVK61e-109A0A0D9WVK6_9ORYZ; Uncharacterized protein
STRINGLPERR07G02950.11e-109(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP384714
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05120.13e-11C2H2 family protein