PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR07G02820.5
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family TCP
Protein Properties Length: 457aa    MW: 49033 Da    PI: 8.1257
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR07G02820.5genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP128.28.1e-40552032134
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................ssssaseceaesss 79 
                       g+kdrhsk++T++g RdRRvRls+++a++f+dLqd+LG+d++sk+ieWL+++a  ai++l+++                ++ +a +  a++++
  LPERR07G02820.5  55 SGGKDRHSKVYTAKGIRDRRVRLSVSTAIQFYDLQDRLGYDQPSKAIEWLIKAAADAIDKLPSLdtnsfpnhpasaslppPTAPAASLAAGEEE 148
                      689*************************************************************999887666655554422222222222222 PP

              TCP  80 ssasnsssg.....kaaksaakskksqksaasalnlak.esrakarararertrekmrikn 134
                      +       g     +  +++ +s+ s++s+ s+l+l++ +sr kar+rarer++   + +n
  LPERR07G02820.5 149 ED------GdgdqqQVVTKSGCSSTSETSKGSVLSLSRsDSRVKARERARERSAAAAKREN 203
                      22......13333245555559999**************************9988776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.4E-4056198IPR005333Transcription factor, TCP
PROSITE profilePS5136931.85657115IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.069181200IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MDICATPTPT TTKRSRPRPE EDDDGGGEPE AKRQQLPWAA QQHPSSRIYR VSRASGGKDR  60
HSKVYTAKGI RDRRVRLSVS TAIQFYDLQD RLGYDQPSKA IEWLIKAAAD AIDKLPSLDT  120
NSFPNHPASA SLPPPTAPAA SLAAGEEEED GDGDQQQVVT KSGCSSTSET SKGSVLSLSR  180
SDSRVKARER ARERSAAAAK RENHTDATTA TAAAASFTEL LTGMATGANE EHKPQPQHSW  240
QQPMATTADY IGFAAAANHP RKSGGHAMAH TFASPAPHLA SIAPIAMAPA QHFTLTPAGG  300
GGGEMTHFSF DHFMPVHAAA AASGGDYNLN FSMSSGLVGV HNRGTLQSNS NISGHHHHQH  360
HQQHQQQLQR LAAPLDTPSN NIPFLFSPAA TAADSHSGTG SGTPPPPTSR RRESTDQISR  420
RGIGLSWMEV KTSKRCNHSC EQYSQLDAAI RDFYRDP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A8e-2862116155Putative transcription factor PCF6
5zkt_B8e-2862116155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR07G02820.5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165443.11e-143transcription factor PCF6-like
TrEMBLA0A0D9WVJ00.0A0A0D9WVJ0_9ORYZ; Uncharacterized protein
STRINGLPERR07G02820.20.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.29e-40TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2