PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR07G02450.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 347aa    MW: 37111.6 Da    PI: 5.6079
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR07G02450.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH581.7e-18172218455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       hn  ErrRRdriN+++  L+el+P++      K +Ka+iL +A+eY+ksLq
  LPERR07G02450.1 172 VHNLSERRRRDRINDKLRALQELVPHC-----NKTDKASILDEAIEYLKSLQ 218
                      6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.01E-19163222No hitNo description
SuperFamilySSF474592.36E-21166230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-21166226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.73168217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.3E-16172218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.7E-19174223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MARRSPDGEL IELLWQDGAV VAHAQTQRRS SGAGGDAQAA GTSGLSGDEE TAVFFPDAGD  60
ELAMGGDIYS QLWHTIANVA QSPPPLPARS DDVSSRVDDA AGLSICGSNA VAPPAMPADD  120
GGAPSSSGGS CPVIKRGRDE QMDIRSEVAD ETPPSKRPAT AAGKRRTRAA EVHNLSERRR  180
RDRINDKLRA LQELVPHCNK TDKASILDEA IEYLKSLQLQ VQIMWMTTGI APMMFPGAHQ  240
LMPPIGMGLN TALMPNQLQR ATHYMNNSMP NQMPHVQSPT TNAPNVPNKT QNDNQIAGPR  300
NPFLHRSDTL TATTQVPGLF PYGAQMAAQN EIQELLSNAV IPSSSGE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1163180KRRTRAAEVHNLSERRRR
2176181ERRRRD
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act as negative regulator of phyB-dependent light signal transduction (PubMed:17485859). Transcription activator that acts as positive regulator of internode elongation. May function via regulation of cell wall-related genes. May play a role in a drought-associated growth-restriction mechanism in response to drought stress (PubMed:22984180). {ECO:0000269|PubMed:17485859, ECO:0000269|PubMed:22984180}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR07G02450.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light in dark-grown etiolated seedlings (PubMed:17485859). Circadian oscillation under 12 h light/12 h dark cycle conditions, with peaks in the middle of the light period (PubMed:17485859, PubMed:22984180). Down-regulated by cold and drought stresses (PubMed:22984180). {ECO:0000269|PubMed:17485859, ECO:0000269|PubMed:22984180}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648046.11e-149transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X2
SwissprotQ10CH51e-72PIL13_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13
TrEMBLA0A0D9WVE10.0A0A0D9WVE1_9ORYZ; Uncharacterized protein
STRINGLPERR07G02450.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31743482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59060.13e-26phytochrome interacting factor 3-like 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T
    Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa.
    Biosci. Biotechnol. Biochem., 2007. 71(5): p. 1183-91
    [PMID:17485859]
  3. Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL
    An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15.
    N Biotechnol, 2011. 28(6): p. 788-97
    [PMID:21549224]
  4. Todaka D, et al.
    Rice phytochrome-interacting factor-like protein OsPIL1 functions as a key regulator of internode elongation and induces a morphological response to drought stress.
    Proc. Natl. Acad. Sci. U.S.A., 2012. 109(39): p. 15947-52
    [PMID:22984180]