PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR07G02100.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family M-type_MADS
Protein Properties Length: 316aa    MW: 34861.6 Da    PI: 5.7668
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR07G02100.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF41.22.1e-131248238
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevavi 38
                      ie+++ r +t+skRr+g++K A+ LS+L+da+vav 
  LPERR07G02100.1 12 YIEEDRDRGITLSKRRKGLFKLANDLSILTDANVAVC 48
                     699********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006613.512347IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-7361IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.2E-14677IPR002100Transcription factor, MADS-box
PfamPF003191.5E-131355IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MPKRSRRKGV EYIEEDRDRG ITLSKRRKGL FKLANDLSIL TDANVAVCLN DNNKVQFFGA  60
PSMEPIASAF LSDPQTQPFA DKQLKAKITS MQSELIQLES EEKEKNKKTG ESIQRFKEVE  120
EESLGTAKHL FSRAQDLSHN DIQELLQVLS PLQRDVKQRL PTIHRDTDIP MIPPPPAPGS  180
PWSRIFPLRP PKFSFPSLVP SQQLPPVSLP QNTAAPPTHA PLVPQPLTNQ PSAIPLLTQW  240
QIRFGVPSPS EVQAYTPVEQ PQNGSPAPAP APPPAPTQTF SDNFLSELLA DISDDGISPA  300
DPFGSPLIDN QLNGMN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1527RRKGVEYIEEDRDRGITLSKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR07G02100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015694519.11e-127PREDICTED: agamous-like MADS-box protein AGL28
TrEMBLA0A0D9WV970.0A0A0D9WV97_9ORYZ; Uncharacterized protein
STRINGLPERR07G02100.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30892276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29962.13e-09AGAMOUS-like 64