PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR07G00110.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 277aa    MW: 29905.3 Da    PI: 5.5992
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR07G00110.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.000146082123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+C+ C + F++   L  H+++H
  LPERR07G00110.1 60 YTCSFCRREFRSAQALGGHMNVH 82
                     9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.39E-65787No hitNo description
SMARTSM003550.00616082IPR015880Zinc finger, C2H2-like
PfamPF139121.8E-56083IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.2196087IPR007087Zinc finger, C2H2
PROSITE patternPS0002806282IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MDAAAMERMA KHYWAMWGSA GGRSGWPAHG GGGEPSWEEQ AFAQDAAGHL GGCVWPPRSY  60
TCSFCRREFR SAQALGGHMN VHRRDRARLR QCDDDDPIVS LCAPPPPLSS ADPHDQFPAA  120
EAADPLLRLY SPKSTAADSD PPQLQPTTYN SSTTNSSPNS CIATIIKESR NKARLFITMP  180
PATDATTTTT LLLEGGVDYG KEEEEEEEIC RRKRRRVDQP SACVRSTDDP AAPADHANKL  240
QVITSPSSSG ASAALLVHPL VALQEVDLEL RLGTTPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-135582229superman protein
2l1o_A2e-135582229Transcriptional regulator SUPERMAN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1211215RKRRR
2212216KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR07G00110.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0058697e-84AP005869.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:B1026C12.
GenBankAP0149637e-84AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006657385.11e-85PREDICTED: uncharacterized protein LOC102712371
RefseqXP_015645557.15e-86zinc finger protein 10
TrEMBLA0A0D9WUI50.0A0A0D9WUI5_9ORYZ; Uncharacterized protein
STRINGLPERR07G00110.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78452943
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.12e-28zinc-finger protein 10