![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LPERR06G23490.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 206aa MW: 22284.9 Da PI: 7.6492 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.9 | 0.00016 | 67 | 86 | 2 | 21 |
EETTTTEEESSHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHir 21 +Cp Cg+ Fs+ + H+r LPERR06G23490.1 67 PCPVCGRKFSTEKAVHGHMR 86 6******************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.46E-6 | 64 | 138 | No hit | No description |
PROSITE profile | PS50157 | 10.367 | 66 | 93 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0079 | 66 | 88 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 6.2E-4 | 67 | 90 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 2.3E-5 | 68 | 89 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 68 | 88 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 6.9E-7 | 115 | 140 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.094 | 116 | 143 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 3.6 | 116 | 138 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 118 | 138 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 206 aa Download sequence Send to blast |
MVASTAHVFV QAAHQLAGAG GGDEPPRHPW HRHLKSAHET DAVASWRERL AAALADAAGE 60 DLDKWIPCPV CGRKFSTEKA VHGHMRCHPG RSYRGMAPPR QPSAGDLGAD GKYYRYVCDR 120 CRAPFATRQA LGGHRASHSG KKGCFWYAKQ EEEAARPAPV VVRDFDLNEL APEAIQAAQE 180 EAQAEAAAVA ANAAADHHVQ EKAKEN |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LPERR06G23490.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015642837.1 | 2e-57 | zinc finger protein ZAT2 | ||||
TrEMBL | A0A0D9WUB7 | 1e-148 | A0A0D9WUB7_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR06G23490.1 | 1e-148 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13010 | 27 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G17180.1 | 3e-16 | C2H2-like zinc finger protein |